Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC099654.15-201ENST00000639802 509 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL596275.2-207ENST00000641188 675 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 RNU4-21P-201ENST00000362802 126 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 U6.112-201ENST00000384129 70 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC087752.1-201ENST00000391360 558 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AL139098.1-201ENST00000407291 389 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 VTA1P1-201ENST00000414044 866 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC079809.1-201ENST00000415468 276 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ARL5AP3-201ENST00000439327 386 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ARAFP2-201ENST00000440565 559 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 MTND4P19-201ENST00000446659 478 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 HMGB1P7-201ENST00000450921 612 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ACA64.4-201ENST00000459070 127 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC023245.1-201ENST00000468501 517 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 RN7SL836P-201ENST00000476140 296 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 NIPA2P2-201ENST00000496376 1083 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 MTCYBP17-201ENST00000503579 789 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC006499.4-201ENST00000510947 694 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC093770.1-201ENST00000511559 571 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 RNU6-1153P-201ENST00000516760 105 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 NAP1L1P1-201ENST00000524793 1063 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AP004609.2-201ENST00000532177 190 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC005000.1-201ENST00000536192 288 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 NDUFA5P11-201ENST00000567995 343 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC012414.6-201ENST00000568241 401 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 MIR4701-201ENST00000583094 63 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC083899.3-201ENST00000603413 594 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC096553.1-201ENST00000605169 829 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AL139418.1-201ENST00000613613 177 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 uc_338.31-201ENST00000615595 186 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 OR1S1-201ENST00000624470 978 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC073488.6-201ENST00000632293 754 ntBASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC39Q9UFE4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 RNA5SP110-201ENST00000362638 115 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 Y_RNA.535-201ENST00000384612 99 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 MTCO1P56-201ENST00000401674 224 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 VN1R12P-201ENST00000403778 876 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 CBX1P3-201ENST00000413296 527 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC096632.2-201ENST00000438139 1239 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL663074.2-201ENST00000440621 479 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 FTLP8-201ENST00000446770 267 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 PPIAP7-201ENST00000454070 489 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms