Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 VN1R9P-201ENST00000614184 867 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RPSAP73-201ENST00000614820 330 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 RMST_10.1-201ENST00000616309 154 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC074101.1-201ENST00000637861 241 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 ZNF652P1-201ENST00000442420 1309 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL590763.1-201ENST00000398297 1545 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 ZNF733P-202ENST00000444809 1573 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL078599.1-201ENST00000402075 293 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 RPS27AP11-201ENST00000402798 447 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 BRWD1P3-201ENST00000428816 390 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC022022.1-201ENST00000430304 178 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 MTCO1P43-201ENST00000431831 488 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL035458.1-201ENST00000433096 585 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC011225.1-201ENST00000457751 369 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC008379.1-201ENST00000463655 464 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AP000942.1-201ENST00000463969 747 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 RN7SL799P-201ENST00000475891 298 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC044860.2-201ENST00000561005 179 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC023825.1-201ENST00000566704 1030 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC126365.2-201ENST00000580630 379 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 OR7E18P-201ENST00000592589 702 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 BNIP3P40-201ENST00000596017 556 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC010608.3-201ENST00000625048 527 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC004808.1-201ENST00000627671 721 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 AC119674.1-212ENST00000641155 993 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 MFSD8-213ENST00000641134 1327 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.35□□□□□ -1.71
NKX3-1Q99801 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
NKX3-1Q99801 PABPC1P6-201ENST00000445594 1829 ntBASIC4.35□□□□□ -1.71
NKX3-1Q99801 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL121950.1-201ENST00000624993 2077 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 U3.2-201ENST00000362981 210 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 MIR600-201ENST00000385007 98 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 MIR122-201ENST00000385044 85 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC233289.1-201ENST00000403700 508 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 SNORA11B-201ENST00000408175 129 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 MTCO3P4-201ENST00000419236 787 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 SLC35E1P1-201ENST00000419313 864 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms