Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 OSTCP5-201ENST00000425293 453 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 GAPDHP58-201ENST00000438477 1006 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC092170.1-201ENST00000440211 356 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 RPL7P32-201ENST00000457119 744 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AP001207.2-201ENST00000519490 539 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 OR8G5-201ENST00000524943 1041 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AP002373.2-201ENST00000541631 1060 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AGGF1P5-201ENST00000567900 919 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 MTCYBP13-201ENST00000578634 1093 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AL445435.1-201ENST00000604232 665 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC009597.2-201ENST00000604659 592 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC126915.2-201ENST00000610957 190 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC092376.2-201ENST00000622621 4116 ntBASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4CQ96CF2 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 SNORA62.2-201ENST00000364672 152 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 SNORA70-201ENST00000384436 135 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MTATP6P20-201ENST00000414147 562 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 USP9YP21-201ENST00000420603 432 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC246680.2-201ENST00000422106 389 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 BRWD1P3-201ENST00000428816 390 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RPL31P44-201ENST00000447680 377 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 OR51B8P-201ENST00000449892 769 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RPS21P4-201ENST00000487122 248 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RPL15P21-201ENST00000495592 567 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC023050.1-201ENST00000498198 304 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RNU6-1028P-201ENST00000517164 93 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 RNA5SP373-201ENST00000517271 95 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC092709.1-201ENST00000521355 1045 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 EIF4A2P5-201ENST00000529914 499 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 OR8K4P-201ENST00000534608 872 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AL132857.1-201ENST00000555180 708 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC006349.1-201ENST00000555526 235 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC027104.1-201ENST00000563702 681 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MIR4675-201ENST00000577898 77 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 BNIP3P38-201ENST00000601117 544 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 AL160237.3-201ENST00000604114 1013 ntBASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4CQ96CF2 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 AC023421.1-201ENST00000590535 1785 ntBASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 OR55B1P-203ENST00000641518 2602 ntBASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP4CQ96CF2 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms