Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RN7SKP153-201ENST00000365026 316 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR320B1-201ENST00000390209 79 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 GNG5P5-201ENST00000420444 220 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MTCO2P17-201ENST00000424336 677 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC090018.1-201ENST00000434369 367 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AL161722.2-201ENST00000434731 981 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 CYCSP11-201ENST00000436426 315 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 Z95152.1-201ENST00000453556 656 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 HIGD1AP8-201ENST00000453927 274 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 TPT1P1-201ENST00000458495 518 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 RN7SL189P-201ENST00000468631 289 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 RPS24P16-201ENST00000497294 392 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AL049838.1-201ENST00000563647 981 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC122134.1-201ENST00000565664 1104 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR4700-201ENST00000578311 74 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR4509-3-201ENST00000578671 94 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR4472-2-201ENST00000582069 67 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR4509-2-201ENST00000583920 94 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AL451049.1-201ENST00000608672 497 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MIR4509-1-201ENST00000618224 94 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC007342.8-201ENST00000623278 678 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC068787.1-201ENST00000623908 691 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AP001784.1-201ENST00000624107 428 ntBASIC4.77□□□□□ -1.65
BEST3Q8N1M1 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
BEST3Q8N1M1 THAP12P5-201ENST00000405864 2275 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 OR9G4-201ENST00000302957 984 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 RN7SKP104-201ENST00000362605 328 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 RN7SKP103-201ENST00000363848 320 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 RNA5SP241-201ENST00000391326 114 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AP000357.1-201ENST00000409926 1165 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 HMGB3P31-201ENST00000413333 595 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 GJA6P-201ENST00000415117 1042 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 DDX39BP1-205ENST00000422507 192 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 MTCO2P23-201ENST00000425216 680 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 RRM2P4-201ENST00000441721 562 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC016772.1-201ENST00000444170 1261 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC012512.1-201ENST00000446594 718 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC008280.2-201ENST00000455473 307 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 HMGN2P25-201ENST00000486956 268 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC026414.1-201ENST00000504046 698 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC098976.1-201ENST00000513014 541 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC022360.1-201ENST00000521058 340 ntBASIC4.76□□□□□ -1.65
BEST3Q8N1M1 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.76□□□□□ -1.65
BEST3Q8N1M1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms