Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 THAP12P4-201ENST00000528321 2266 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 RNU6-207P-201ENST00000384137 107 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 RPSAP35-201ENST00000413753 818 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC007161.1-204ENST00000423039 460 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC115285.1-201ENST00000424879 736 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC122718.1-201ENST00000439448 744 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 LINC02210-201ENST00000444561 288 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL035551.1-201ENST00000446931 348 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 IGBP1P3-201ENST00000447449 1000 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 FAM133DP-201ENST00000464802 691 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC018635.1-201ENST00000468292 1030 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 RPS4XP20-201ENST00000505751 772 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 RN7SKP21-201ENST00000516503 220 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL358913.1-201ENST00000554342 121 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 MIR4737-201ENST00000583979 81 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC008507.2-201ENST00000588402 1176 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC090330.1-201ENST00000588646 764 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC006272.2-201ENST00000594725 163 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC092653.1-201ENST00000608509 531 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL445423.1-201ENST00000609941 536 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC016597.2-201ENST00000613256 341 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 MIR6780A-201ENST00000615089 68 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AC022960.3-201ENST00000619794 441 ntBASIC5.06□□□□□ -1.6
COL28A1Q2UY09 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL28A1Q2UY09 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC017007.4-201ENST00000503353 1352 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL078599.1-201ENST00000402075 293 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 RN7SKP222-201ENST00000410651 315 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 VN1R51P-201ENST00000411675 945 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 SETP15-201ENST00000412724 337 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL445183.3-201ENST00000414168 502 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 MTCO3P4-201ENST00000419236 787 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 RIMKLBP2-201ENST00000424737 654 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 RPS4XP16-201ENST00000427198 791 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC004975.1-201ENST00000428733 208 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 ETF1P3-201ENST00000430422 1160 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FTLP19-201ENST00000433300 394 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 GSTM5P1-201ENST00000434751 660 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 TDGF1P1-201ENST00000445734 527 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL133244.1-201ENST00000456007 258 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 snoU13.1-201ENST00000459157 104 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 RN7SL41P-201ENST00000476144 297 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AP000859.1-201ENST00000525536 307 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms