Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.36□□□□□ -1.71
LIM2P55344 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.36□□□□□ -1.71
LIM2P55344 TRIM60P13-201ENST00000432350 1283 ntBASIC4.36□□□□□ -1.71
LIM2P55344 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.36□□□□□ -1.71
LIM2P55344 AL606490.8-201ENST00000441624 319 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.36□□□□□ -1.71
LIM2P55344 AC073264.2-201ENST00000448886 166 ntBASIC4.36□□□□□ -1.71
LIM2P55344 CEACAMP6-201ENST00000452007 574 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AL513533.1-201ENST00000453728 415 ntBASIC4.36□□□□□ -1.71
LIM2P55344 ISCUP1-201ENST00000454451 448 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AC025181.1-201ENST00000477507 416 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.36□□□□□ -1.71
LIM2P55344 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.36□□□□□ -1.71
LIM2P55344 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LIM2P55344 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 AL358913.1-201ENST00000554342 121 ntBASIC4.36□□□□□ -1.71
LIM2P55344 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.36□□□□□ -1.71
LIM2P55344 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.36□□□□□ -1.71
LIM2P55344 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.36□□□□□ -1.71
LIM2P55344 AP005262.1-201ENST00000582646 997 ntBASIC4.36□□□□□ -1.71
LIM2P55344 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.36□□□□□ -1.71
LIM2P55344 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.36□□□□□ -1.71
LIM2P55344 BNIP3P32-201ENST00000600015 554 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AC068790.7-201ENST00000602347 528 ntBASIC4.36□□□□□ -1.71
LIM2P55344 uc_338.18-201ENST00000615451 175 ntBASIC4.36□□□□□ -1.71
LIM2P55344 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 AC140113.4-201ENST00000622087 222 ntBASIC4.36□□□□□ -1.71
LIM2P55344 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 OR51C1P-202ENST00000641159 1444 ntBASIC4.36□□□□□ -1.71
LIM2P55344 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 VPS35P1-201ENST00000563400 1518 ntBASIC4.36□□□□□ -1.71
LIM2P55344 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIM2P55344 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIM2P55344 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LIM2P55344 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LIM2P55344 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
LIM2P55344 AL606537.1-201ENST00000607258 2011 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AC021146.4-201ENST00000309229 279 ntBASIC4.35□□□□□ -1.71
LIM2P55344 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIM2P55344 RNU6-249P-201ENST00000363016 102 ntBASIC4.35□□□□□ -1.71
LIM2P55344 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LIM2P55344 RNA5SP397-201ENST00000391323 118 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AC104297.1-201ENST00000393779 870 ntBASIC4.35□□□□□ -1.71
LIM2P55344 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.35□□□□□ -1.71
LIM2P55344 AC019050.1-201ENST00000418508 492 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 RPL21P43-201ENST00000425440 472 ntBASIC4.35□□□□□ -1.71
LIM2P55344 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AL606490.7-201ENST00000433136 191 ntBASIC4.35□□□□□ -1.71
LIM2P55344 PPIAP13-201ENST00000434706 478 ntBASIC4.35□□□□□ -1.71
LIM2P55344 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.35□□□□□ -1.71
LIM2P55344 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AC114878.1-201ENST00000441166 358 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AL935212.3-201ENST00000450729 284 ntBASIC4.35□□□□□ -1.71
LIM2P55344 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIM2P55344 LARP7P4-201ENST00000481075 878 ntBASIC4.35□□□□□ -1.71
LIM2P55344 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AC020937.1-201ENST00000519677 1013 ntBASIC4.35□□□□□ -1.71
LIM2P55344 OR4V1P-201ENST00000525394 1140 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AP006289.1-201ENST00000538089 277 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.35□□□□□ -1.71
LIM2P55344 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 AC087283.1-201ENST00000604029 1074 ntBASIC4.35□□□□□ -1.71
LIM2P55344 AL133338.2-201ENST00000604292 736 ntBASIC4.35□□□□□ -1.71
LIM2P55344 BX322635.1-201ENST00000605804 496 ntBASIC4.35□□□□□ -1.71
LIM2P55344 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.35□□□□□ -1.71
LIM2P55344 AC019131.2-201ENST00000609071 870 ntBASIC4.35□□□□□ -1.71
LIM2P55344 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIM2P55344 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIM2P55344 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.35□□□□□ -1.71
LIM2P55344 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.35□□□□□ -1.71
LIM2P55344 AC073429.2-201ENST00000569694 1444 ntBASIC4.35□□□□□ -1.71
LIM2P55344 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.35□□□□□ -1.71
LIM2P55344 MAPK10-349ENST00000641767 3661 ntBASIC4.34□□□□□ -1.71
LIM2P55344 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 AC079741.1-201ENST00000321498 212 ntBASIC4.34□□□□□ -1.71
LIM2P55344 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LIM2P55344 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LIM2P55344 SNORA70F-201ENST00000384142 135 ntBASIC4.34□□□□□ -1.71
LIM2P55344 MIR921-201ENST00000401133 56 ntBASIC4.34□□□□□ -1.71
LIM2P55344 MIR937-201ENST00000401271 86 ntBASIC4.34□□□□□ -1.71
LIM2P55344 AL589655.1-201ENST00000405398 482 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms