Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
NEK3P51956 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.62□□□□□ -1.51
NEK3P51956 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NEK3P51956 GAPDHP24-201ENST00000328713 983 ntBASIC5.61□□□□□ -1.51
NEK3P51956 RNU6-224P-201ENST00000384055 107 ntBASIC5.61□□□□□ -1.51
NEK3P51956 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.61□□□□□ -1.51
NEK3P51956 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 Z93019.1-201ENST00000416450 973 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC019050.1-201ENST00000418508 492 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.61□□□□□ -1.51
NEK3P51956 MTCYBP32-201ENST00000427945 1084 ntBASIC5.61□□□□□ -1.51
NEK3P51956 RPS26P40-201ENST00000435209 294 ntBASIC5.61□□□□□ -1.51
NEK3P51956 OR6D1P-201ENST00000436165 939 ntBASIC5.61□□□□□ -1.51
NEK3P51956 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.61□□□□□ -1.51
NEK3P51956 AC073136.1-201ENST00000449426 2884 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AZGP1P2-201ENST00000454506 345 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 MTND6P6-201ENST00000478031 263 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC069528.1-202ENST00000482888 637 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC090638.1-201ENST00000498296 909 ntBASIC5.61□□□□□ -1.51
NEK3P51956 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.61□□□□□ -1.51
NEK3P51956 AC091912.1-201ENST00000511351 248 ntBASIC5.61□□□□□ -1.51
NEK3P51956 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.61□□□□□ -1.51
NEK3P51956 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 MTCO3P15-201ENST00000526563 574 ntBASIC5.61□□□□□ -1.51
NEK3P51956 PMS2P3-207ENST00000529061 717 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.61□□□□□ -1.51
NEK3P51956 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 AL132857.1-201ENST00000555180 708 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 NF1P5-201ENST00000588287 448 ntBASIC5.61□□□□□ -1.51
NEK3P51956 CR788268.1-201ENST00000603931 1809 ntBASIC5.61□□□□□ -1.51
NEK3P51956 SUGT1P3-202ENST00000604259 383 ntBASIC5.61□□□□□ -1.51
NEK3P51956 AL118522.2-201ENST00000616045 615 ntBASIC5.61□□□□□ -1.51
NEK3P51956 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.61□□□□□ -1.51
NEK3P51956 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.61□□□□□ -1.51
NEK3P51956 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.61□□□□□ -1.51
NEK3P51956 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NEK3P51956 AC093535.2-201ENST00000624769 2326 ntBASIC5.6□□□□□ -1.51
NEK3P51956 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 AL022311.1-201ENST00000623726 19416 ntBASIC5.6□□□□□ -1.51
NEK3P51956 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 U3.7-201ENST00000363668 216 ntBASIC5.6□□□□□ -1.51
NEK3P51956 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 VDAC2P1-201ENST00000399358 958 ntBASIC5.6□□□□□ -1.51
NEK3P51956 AC009804.1-201ENST00000400949 179 ntBASIC5.6□□□□□ -1.51
NEK3P51956 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 AL590609.2-201ENST00000421430 368 ntBASIC5.6□□□□□ -1.51
NEK3P51956 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 GTF2IP2-201ENST00000424290 697 ntBASIC5.6□□□□□ -1.51
NEK3P51956 AL031736.2-201ENST00000426573 787 ntBASIC5.6□□□□□ -1.51
NEK3P51956 CFL1P1-202ENST00000432948 411 ntBASIC5.6□□□□□ -1.51
NEK3P51956 USP9YP24-201ENST00000434374 697 ntBASIC5.6□□□□□ -1.51
NEK3P51956 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 Z80107.1-201ENST00000436830 412 ntBASIC5.6□□□□□ -1.51
NEK3P51956 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 TXNP5-201ENST00000441043 315 ntBASIC5.6□□□□□ -1.51
NEK3P51956 USP9YP17-201ENST00000444617 696 ntBASIC5.6□□□□□ -1.51
NEK3P51956 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
NEK3P51956 RHEBP2-201ENST00000450289 600 ntBASIC5.6□□□□□ -1.51
NEK3P51956 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 AC021193.1-201ENST00000511607 420 ntBASIC5.6□□□□□ -1.51
NEK3P51956 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 RFPL4AP5-201ENST00000514977 504 ntBASIC5.6□□□□□ -1.51
NEK3P51956 RN7SKP99-201ENST00000517028 307 ntBASIC5.6□□□□□ -1.51
NEK3P51956 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.6□□□□□ -1.51
NEK3P51956 OR10V3P-201ENST00000525712 725 ntBASIC5.6□□□□□ -1.51
NEK3P51956 OR4A2P-201ENST00000527276 913 ntBASIC5.6□□□□□ -1.51
NEK3P51956 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NEK3P51956 OR5AM1P-201ENST00000532136 1032 ntBASIC5.6□□□□□ -1.51
NEK3P51956 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.6□□□□□ -1.51
NEK3P51956 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms