Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.52□□□□□ -1.37
LIG3P49916 MTCYBP43-201ENST00000513621 740 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC097486.1-201ENST00000515331 210 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG3P49916 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC087276.1-201ENST00000529659 480 ntBASIC6.52□□□□□ -1.37
LIG3P49916 DEFB108A-201ENST00000530110 222 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.52□□□□□ -1.37
LIG3P49916 RPS3AP4-201ENST00000555161 764 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AP005205.1-201ENST00000563503 508 ntBASIC6.52□□□□□ -1.37
LIG3P49916 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG3P49916 AP001004.1-201ENST00000582468 324 ntBASIC6.52□□□□□ -1.37
LIG3P49916 MIR548AB-201ENST00000584917 84 ntBASIC6.52□□□□□ -1.37
LIG3P49916 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
LIG3P49916 AP001264.1-201ENST00000620602 703 ntBASIC6.52□□□□□ -1.37
LIG3P49916 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG3P49916 AL121768.1-201ENST00000613917 2544 ntBASIC6.52□□□□□ -1.37
LIG3P49916 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG3P49916 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG3P49916 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG3P49916 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
LIG3P49916 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 GUCY1B2-204ENST00000531898 1979 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC114786.1-201ENST00000512892 1415 ntBASIC6.51□□□□□ -1.37
LIG3P49916 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
LIG3P49916 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 RNU6-492P-201ENST00000363035 104 ntBASIC6.51□□□□□ -1.37
LIG3P49916 PRELID1P1-201ENST00000403549 660 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AL121835.1-201ENST00000404250 354 ntBASIC6.51□□□□□ -1.37
LIG3P49916 RPS3AP24-201ENST00000407896 734 ntBASIC6.51□□□□□ -1.37
LIG3P49916 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 RN7SKP17-201ENST00000411242 351 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 AL512649.1-201ENST00000428997 581 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AC097359.1-201ENST00000447946 463 ntBASIC6.51□□□□□ -1.37
LIG3P49916 HCG17-214ENST00000453558 732 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 NDUFA5P5-201ENST00000468361 342 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC112206.1-201ENST00000468416 477 ntBASIC6.51□□□□□ -1.37
LIG3P49916 RPL23AP64-201ENST00000469465 435 ntBASIC6.51□□□□□ -1.37
LIG3P49916 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC6.51□□□□□ -1.37
LIG3P49916 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 AC108078.3-201ENST00000502633 489 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC011352.3-201ENST00000505162 593 ntBASIC6.51□□□□□ -1.37
LIG3P49916 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 RN7SKP183-201ENST00000517169 324 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 CR383656.6-201ENST00000550518 394 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC121758.1-202ENST00000556917 658 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 AC090751.1-201ENST00000566966 267 ntBASIC6.51□□□□□ -1.37
LIG3P49916 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 MIR4528-201ENST00000577763 90 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.51□□□□□ -1.37
LIG3P49916 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 SEPT7P9-203ENST00000604116 343 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AL022154.1-201ENST00000604698 785 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC090970.3-201ENST00000612566 866 ntBASIC6.51□□□□□ -1.37
LIG3P49916 MESTIT1_2.1-201ENST00000616328 235 ntBASIC6.51□□□□□ -1.37
LIG3P49916 MIR6085-201ENST00000618314 110 ntBASIC6.51□□□□□ -1.37
LIG3P49916 AC241377.1-201ENST00000619797 406 ntBASIC6.51□□□□□ -1.37
LIG3P49916 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC6.51□□□□□ -1.37
LIG3P49916 AL356596.1-201ENST00000624230 379 ntBASIC6.51□□□□□ -1.37
LIG3P49916 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 AC079228.1-201ENST00000624774 1049 ntBASIC6.51□□□□□ -1.37
LIG3P49916 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
LIG3P49916 AC138907.8-201ENST00000623981 2256 ntBASIC6.51□□□□□ -1.37
LIG3P49916 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIG3P49916 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.51□□□□□ -1.37
LIG3P49916 OR5BR1P-201ENST00000524992 1330 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms