Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC079809.1-201ENST00000415468 276 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 BX119904.4-201ENST00000424402 301 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 VN1R108P-201ENST00000431580 830 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CFL1P1-202ENST00000432948 411 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 H2AFZP6-201ENST00000444403 394 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 IGBP1P3-201ENST00000447449 1000 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AZGP1P2-201ENST00000454506 345 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AL133244.1-201ENST00000456007 258 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC010486.2-201ENST00000505572 483 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CDH12P4-201ENST00000517835 295 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CDH12P3-201ENST00000517935 295 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CDH12P1-201ENST00000518435 295 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AC025165.5-201ENST00000602802 578 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 IMMP1LP3-201ENST00000604197 224 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CASC19-264ENST00000641912 1184 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 AL445523.1-201ENST00000451184 1362 ntBASIC5.53□□□□□ -1.52
DKK3Q9UBP4 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.53□□□□□ -1.52
DKK3Q9UBP4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL513185.3-201ENST00000433335 1300 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 ZNF849P-201ENST00000594711 1566 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RN7SKP115-201ENST00000363177 317 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 U3.7-201ENST00000363668 216 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RPL7P27-201ENST00000403775 720 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RN7SKP59-201ENST00000410520 314 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 MTND4P3-201ENST00000417829 541 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 MTND2P18-201ENST00000419962 1030 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RPL7P56-201ENST00000429441 717 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RPL12P17-201ENST00000432393 498 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 CYCSP12-201ENST00000437729 300 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 LINC02210-201ENST00000444561 288 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL589880.1-201ENST00000448271 287 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL672138.1-201ENST00000450604 1015 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RPL21P6-201ENST00000479171 504 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC079203.1-201ENST00000487972 404 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RPS12P31-201ENST00000491419 398 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RN7SL447P-201ENST00000494711 245 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 OR5M14P-201ENST00000506803 618 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 HMGB1P44-201ENST00000508597 572 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC109464.1-201ENST00000511091 819 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 MTND4LP31-201ENST00000514859 294 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 HIGD1AP5-201ENST00000529959 259 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC087897.1-201ENST00000550134 156 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 BLZF2P-201ENST00000553776 1130 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC109446.2-201ENST00000567872 497 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 FKBP1AP1-201ENST00000594588 318 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms