Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC093281.2-201ENST00000510153 597 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 IGLVIV-64-201ENST00000518581 301 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AP001267.4-201ENST00000602598 545 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AL392088.2-201ENST00000637607 285 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 KARSP3-201ENST00000571212 1504 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AC107982.1-201ENST00000507171 1300 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 NLRP3P1-201ENST00000622303 1785 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AF287957.1-201ENST00000607368 1595 ntBASIC5.93□□□□□ -1.46
TRIM39Q9HCM9 AL606537.1-201ENST00000607258 2011 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AL512646.1-201ENST00000269395 1077 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RNA5SP273-201ENST00000362484 113 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RNA5SP477-201ENST00000362639 119 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 U3.23-201ENST00000391132 200 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 NPM1P11-201ENST00000417106 855 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 DYNLL1P7-201ENST00000429273 258 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 EIF5AP4-201ENST00000441206 465 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 MTND1P30-201ENST00000441241 901 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RPS10P18-201ENST00000442662 495 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 TAF9P1-201ENST00000445421 515 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC108463.1-201ENST00000450258 347 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 GEMIN2P1-201ENST00000454246 752 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 TAF9P2-201ENST00000454958 515 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC072039.1-201ENST00000477611 581 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RPS7P6-201ENST00000485777 579 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RN7SKP31-201ENST00000516354 278 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 RNU6-885P-201ENST00000516607 104 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 Y_RNA.695-201ENST00000516715 107 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 NDUFA5P2-201ENST00000519723 344 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC106038.2-201ENST00000520706 568 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 WBP1LP3-201ENST00000523033 208 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 OR5AK1P-201ENST00000524837 922 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC090888.3-201ENST00000558917 509 ntBASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.92□□□□□ -1.46
TRIM39Q9HCM9 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms