Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORA31.13-201ENST00000516624 135 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC013701.1-201ENST00000522657 465 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 HSPE1P2-201ENST00000554777 306 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC015720.2-201ENST00000567709 334 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 TVP23CP2-201ENST00000571473 623 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC063977.5-201ENST00000601044 974 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 SUGT1P3-202ENST00000604259 383 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC010200.2-201ENST00000605098 235 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AL008729.2-201ENST00000606393 473 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC026979.4-201ENST00000606555 645 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC009163.6-201ENST00000612367 342 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
PDLIM3Q53GG5 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 MTND5P11-201ENST00000511037 1812 ntBASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 AC011755.1-201ENST00000623763 2049 ntBASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 PWAR1-201ENST00000624188 2414 ntBASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.69
PDLIM3Q53GG5 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RNU6-146P-201ENST00000384602 108 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 CHMP1B2P-201ENST00000399581 597 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL109941.1-201ENST00000401925 229 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL009179.1-201ENST00000406085 265 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL158825.1-201ENST00000414735 521 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 HSFY1P1-201ENST00000423928 1178 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC005033.1-201ENST00000428904 813 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL096829.2-201ENST00000446582 742 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RNU6-1218P-201ENST00000458990 108 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RPS24P16-201ENST00000497294 392 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC025459.1-201ENST00000504072 156 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ENPP7P11-201ENST00000505915 627 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 PGBD4P4-201ENST00000509673 613 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RNU6-415P-201ENST00000516252 97 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 RNU6-941P-201ENST00000516346 108 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC090666.1-201ENST00000578241 445 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC011840.5-201ENST00000582125 771 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC087283.1-201ENST00000604029 1074 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AL049844.2-201ENST00000604280 628 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC026790.2-201ENST00000606282 430 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC091953.3-201ENST00000623220 236 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC010608.3-201ENST00000625048 527 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 FRG1EP-201ENST00000634469 770 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC119674.1-212ENST00000641155 993 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 AC073869.10-201ENST00000642016 354 ntBASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 HSPA8P19-201ENST00000505359 1517 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms