Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC093890.1-201ENST00000502554 540 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC113347.3-201ENST00000509113 148 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 snoZ278.1-201ENST00000517059 112 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 IGLV2-28-201ENST00000520681 304 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC125611.1-201ENST00000549563 229 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC051619.2-201ENST00000559063 397 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC022662.1-201ENST00000580252 331 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 MIR548Y-201ENST00000582739 110 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC010503.3-201ENST00000594355 540 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 MTND3P19-201ENST00000603825 345 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 SUGT1P3-202ENST00000604259 383 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC013244.1-201ENST00000604279 193 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 SUMO2P15-201ENST00000604285 278 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AL139344.1-201ENST00000605228 195 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC010245.2-201ENST00000606908 1167 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 TUSC7.1-201ENST00000610969 165 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC021106.3-201ENST00000623925 531 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 U6.107-201ENST00000637108 79 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RLIMP2-201ENST00000427891 1563 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 VPS35P1-201ENST00000563400 1518 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 MTCO1P6-201ENST00000481192 1384 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC104446.1-201ENST00000613728 1321 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC125336.1-201ENST00000508893 2827 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 RNU4-2-201ENST00000365668 141 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 PPIAP9-201ENST00000403866 498 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 Z93019.1-201ENST00000416450 973 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 MFSD13B-201ENST00000420133 1290 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AP001324.1-201ENST00000428553 399 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 RPL7P29-201ENST00000437151 728 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 NPM1P13-201ENST00000452663 865 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC091544.1-201ENST00000484702 348 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC010486.2-201ENST00000505572 483 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC117522.2-201ENST00000510049 657 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC010486.3-201ENST00000511602 785 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 SNORA70.11-201ENST00000515987 138 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 SNORA70.13-201ENST00000516116 138 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 SEPT10P1-201ENST00000517342 1162 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC016180.1-201ENST00000567945 403 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 MIR1269B-201ENST00000580405 75 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AP001269.3-201ENST00000588718 329 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 FKBP1AP1-201ENST00000594588 318 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC010632.3-201ENST00000611377 369 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AL118522.2-201ENST00000616045 615 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC132068.1-201ENST00000623805 459 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 AC073869.8-201ENST00000641806 335 ntBASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTCHD3Q3KNS1 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC104454.1-201ENST00000421341 1401 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC026523.2-201ENST00000625039 7739 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms