Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
HDAC4P56524 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HDAC4P56524 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.33□□□□□ -1.56
HDAC4P56524 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
HDAC4P56524 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HDAC4P56524 AL590763.1-201ENST00000398297 1545 ntBASIC5.33□□□□□ -1.56
HDAC4P56524 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HDAC4P56524 ZNF652P1-201ENST00000442420 1309 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDAC4P56524 SNORA2.3-201ENST00000383920 135 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 AL133270.1-201ENST00000402635 279 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 RN7SKP114-201ENST00000410327 279 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 RN7SKP273-201ENST00000411392 314 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AC069282.1-201ENST00000411911 526 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 VN1R37P-201ENST00000419096 748 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 AC005033.1-201ENST00000428904 813 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 BX119904.1-201ENST00000432026 348 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 AURKAPS1-201ENST00000451805 1212 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 PSMC1P13-201ENST00000458195 985 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.32□□□□□ -1.56
HDAC4P56524 RN7SL860P-201ENST00000473738 223 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 RN7SL727P-201ENST00000482164 296 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AC008953.1-201ENST00000497334 318 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 RNA5SP92-201ENST00000516437 110 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.32□□□□□ -1.56
HDAC4P56524 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.32□□□□□ -1.56
HDAC4P56524 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.32□□□□□ -1.56
HDAC4P56524 MIR7155-201ENST00000615925 56 ntBASIC5.32□□□□□ -1.56
HDAC4P56524 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
HDAC4P56524 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HDAC4P56524 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.32□□□□□ -1.56
HDAC4P56524 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDAC4P56524 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDAC4P56524 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDAC4P56524 OR51H2P-202ENST00000641424 3046 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.31□□□□□ -1.56
HDAC4P56524 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
HDAC4P56524 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.31□□□□□ -1.56
HDAC4P56524 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.31□□□□□ -1.56
HDAC4P56524 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.31□□□□□ -1.56
HDAC4P56524 MIR16-2-201ENST00000362117 81 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 U3.36-201ENST00000408418 213 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AL160175.1-201ENST00000428124 247 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 PTMAP6-201ENST00000439110 327 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.31□□□□□ -1.56
HDAC4P56524 H2AFZP6-201ENST00000444403 394 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AC023512.1-201ENST00000444513 499 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 AC245028.2-201ENST00000458673 253 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 RNA5SP103-201ENST00000459503 118 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 CDH12P2-201ENST00000504393 298 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AC112518.2-201ENST00000508565 425 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 MTCO3P27-201ENST00000514397 196 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 RNA5SP360-201ENST00000516555 118 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 SCARNA1-201ENST00000517138 166 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 HAUS1P3-201ENST00000523909 662 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC5.31□□□□□ -1.56
HDAC4P56524 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDAC4P56524 SULT1C2P2-201ENST00000562517 294 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC5.31□□□□□ -1.56
HDAC4P56524 AC005034.4-201ENST00000603612 899 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 RPAP2P1-201ENST00000603626 1168 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AC079880.2-201ENST00000603790 1213 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 AC018695.5-201ENST00000605872 315 ntBASIC5.31□□□□□ -1.56
HDAC4P56524 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.31□□□□□ -1.56
HDAC4P56524 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms