Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CDRT1-208ENST00000630868 794 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 SCARNA15-201ENST00000607520 4325 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 EI24P3-201ENST00000399046 1062 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 Z98745.1-201ENST00000402553 494 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 MTATP6P19-201ENST00000413797 659 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 AC093578.1-201ENST00000415219 368 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 AC091390.3-201ENST00000426478 338 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A4P53420 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A4P53420 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A4P53420 TPT1P1-201ENST00000458495 518 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 AC098799.3-201ENST00000506095 438 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 AC006499.6-201ENST00000511169 607 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 RNU4-89P-201ENST00000607443 133 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 MIR6875-201ENST00000617506 72 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A4P53420 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.76□□□□□ -1.65
COL4A4P53420 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
COL4A4P53420 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL4A4P53420 AL133268.1-201ENST00000405676 1401 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL4A4P53420 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL4A4P53420 MIR331-201ENST00000362302 94 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL4A4P53420 SNRPFP1-201ENST00000414761 252 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 RPL7P2-201ENST00000427639 268 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.76□□□□□ -1.65
COL4A4P53420 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.76□□□□□ -1.65
COL4A4P53420 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.76□□□□□ -1.65
COL4A4P53420 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.76□□□□□ -1.65
COL4A4P53420 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.76□□□□□ -1.65
COL4A4P53420 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.76□□□□□ -1.65
COL4A4P53420 RN7SL600P-201ENST00000581811 299 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 MIR3124-201ENST00000582636 67 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 MIR3936-201ENST00000584304 110 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 AC008739.3-201ENST00000603262 127 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 AC024220.1-201ENST00000603675 484 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 AC234782.5-201ENST00000617723 324 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 MIR3653-201ENST00000625572 110 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
COL4A4P53420 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
COL4A4P53420 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
COL4A4P53420 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.76□□□□□ -1.65
COL4A4P53420 DNM1P47-203ENST00000571780 12667 ntBASIC4.76□□□□□ -1.65
COL4A4P53420 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 AC106871.1-201ENST00000568324 3102 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 AL627171.1-201ENST00000618845 1308 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC4.75□□□□□ -1.65
COL4A4P53420 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL4A4P53420 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
COL4A4P53420 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 AC005831.1-201ENST00000624384 1697 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 AC004938.1-201ENST00000438468 308 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 RPL6P5-201ENST00000445678 828 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 RPL23AP43-201ENST00000446445 471 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 PRSS3P4-201ENST00000453323 162 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 snoU13.24-201ENST00000458998 104 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 RPS27AP13-201ENST00000498403 237 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 USP9YP2-201ENST00000504503 1000 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 USP9YP1-201ENST00000513521 1002 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 AC105233.3-201ENST00000531125 744 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.75□□□□□ -1.65
COL4A4P53420 AC006116.5-201ENST00000591936 559 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.75□□□□□ -1.65
COL4A4P53420 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.75□□□□□ -1.65
COL4A4P53420 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL4A4P53420 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.75□□□□□ -1.65
COL4A4P53420 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL4A4P53420 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.75□□□□□ -1.65
COL4A4P53420 MFSD8-242ENST00000641690 4199 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 MAPK10-372ENST00000641954 3413 ntBASIC4.75□□□□□ -1.65
COL4A4P53420 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms