Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH6P52701 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
MSH6P52701 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
MSH6P52701 RN7SKP186-201ENST00000365371 303 ntBASIC6.3□□□□□ -1.4
MSH6P52701 OR8G2P-201ENST00000412796 908 ntBASIC6.3□□□□□ -1.4
MSH6P52701 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC6.3□□□□□ -1.4
MSH6P52701 AC018644.1-201ENST00000429934 551 ntBASIC6.3□□□□□ -1.4
MSH6P52701 BTF3P10-201ENST00000433415 495 ntBASIC6.3□□□□□ -1.4
MSH6P52701 RPS29P7-201ENST00000439662 171 ntBASIC6.3□□□□□ -1.4
MSH6P52701 CYCSP24-201ENST00000445119 316 ntBASIC6.3□□□□□ -1.4
MSH6P52701 APOA2-207ENST00000470459 416 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH6P52701 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH6P52701 AC138832.1-201ENST00000522871 556 ntBASIC6.3□□□□□ -1.4
MSH6P52701 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC6.3□□□□□ -1.4
MSH6P52701 AL451086.1-201ENST00000605596 223 ntBASIC6.3□□□□□ -1.4
MSH6P52701 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC6.3□□□□□ -1.4
MSH6P52701 AC091953.5-201ENST00000622919 233 ntBASIC6.3□□□□□ -1.4
MSH6P52701 AL356121.2-201ENST00000624715 780 ntBASIC6.3□□□□□ -1.4
MSH6P52701 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH6P52701 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSH6P52701 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSH6P52701 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.3□□□□□ -1.4
MSH6P52701 ST7-221ENST00000465133 2155 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH6P52701 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH6P52701 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.29□□□□□ -1.4
MSH6P52701 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.29□□□□□ -1.4
MSH6P52701 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH6P52701 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH6P52701 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH6P52701 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSH6P52701 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSH6P52701 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH6P52701 HMGN2P27-201ENST00000427352 270 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.29□□□□□ -1.4
MSH6P52701 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH6P52701 RPL5P32-201ENST00000454085 879 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH6P52701 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
MSH6P52701 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC6.29□□□□□ -1.4
MSH6P52701 RPL35P6-201ENST00000490024 372 ntBASIC6.29□□□□□ -1.4
MSH6P52701 OR5BC1P-201ENST00000529327 739 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AGGF1P9-201ENST00000561884 913 ntBASIC6.29□□□□□ -1.4
MSH6P52701 RN7SL600P-201ENST00000581811 299 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AL031119.1-201ENST00000404707 1879 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AL158163.1-201ENST00000603915 1649 ntBASIC6.29□□□□□ -1.4
MSH6P52701 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH6P52701 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
MSH6P52701 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 AL161912.2-201ENST00000565707 3007 ntBASIC6.28□□□□□ -1.4
MSH6P52701 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 AP005435.3-201ENST00000531260 3198 ntBASIC6.28□□□□□ -1.4
MSH6P52701 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
MSH6P52701 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH6P52701 AC007738.1-201ENST00000413892 348 ntBASIC6.28□□□□□ -1.4
MSH6P52701 AC069157.1-201ENST00000421749 137 ntBASIC6.28□□□□□ -1.4
MSH6P52701 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH6P52701 AC091390.3-201ENST00000426478 338 ntBASIC6.28□□□□□ -1.4
MSH6P52701 YME1L1P1-201ENST00000429435 297 ntBASIC6.28□□□□□ -1.4
MSH6P52701 NFYAP1-201ENST00000431953 972 ntBASIC6.28□□□□□ -1.4
MSH6P52701 AL050321.1-201ENST00000432363 400 ntBASIC6.28□□□□□ -1.4
MSH6P52701 AL133547.1-201ENST00000448546 220 ntBASIC6.28□□□□□ -1.4
MSH6P52701 AC008958.1-201ENST00000511047 682 ntBASIC6.28□□□□□ -1.4
MSH6P52701 AL359219.2-201ENST00000555184 348 ntBASIC6.28□□□□□ -1.4
MSH6P52701 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSH6P52701 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
MSH6P52701 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.28□□□□□ -1.4
MSH6P52701 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH6P52701 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH6P52701 AC010266.2-201ENST00000564741 3255 ntBASIC6.27□□□□□ -1.41
MSH6P52701 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSH6P52701 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
MSH6P52701 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSH6P52701 MIR200C-201ENST00000384980 68 ntBASIC6.27□□□□□ -1.41
MSH6P52701 ARL4AP5-201ENST00000404372 599 ntBASIC6.27□□□□□ -1.41
MSH6P52701 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH6P52701 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH6P52701 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH6P52701 snoU13.24-201ENST00000458998 104 ntBASIC6.27□□□□□ -1.41
MSH6P52701 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH6P52701 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH6P52701 AC006116.5-201ENST00000591936 559 ntBASIC6.27□□□□□ -1.41
MSH6P52701 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH6P52701 TCP11X1-202ENST00000622971 1372 ntBASIC6.27□□□□□ -1.41
MSH6P52701 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH6P52701 AL449283.1-201ENST00000602631 3403 ntBASIC6.27□□□□□ -1.41
MSH6P52701 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH6P52701 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSH6P52701 AC006971.1-201ENST00000407916 4486 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms