Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.25□□□□□ -1.57
PTPN9P43378 IGLV2-28-201ENST00000520681 304 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.25□□□□□ -1.57
PTPN9P43378 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5.25□□□□□ -1.57
PTPN9P43378 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 AL049830.4-201ENST00000555149 351 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 SETP1-201ENST00000556014 845 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.25□□□□□ -1.57
PTPN9P43378 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 AC010735.1-201ENST00000567305 1026 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.25□□□□□ -1.57
PTPN9P43378 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.25□□□□□ -1.57
PTPN9P43378 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.25□□□□□ -1.57
PTPN9P43378 RMST_10.1-201ENST00000616309 154 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 AC084824.4-201ENST00000620106 731 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 AC083865.1-201ENST00000636634 831 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
PTPN9P43378 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTPN9P43378 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
PTPN9P43378 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
PTPN9P43378 AC011447.7-201ENST00000624228 1590 ntBASIC5.25□□□□□ -1.57
PTPN9P43378 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
PTPN9P43378 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 AL627171.1-201ENST00000618845 1308 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC013442.1-201ENST00000397347 228 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.24□□□□□ -1.57
PTPN9P43378 MTCO2P8-201ENST00000412213 658 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC5.24□□□□□ -1.57
PTPN9P43378 FO393414.1-201ENST00000428697 1184 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC005189.1-201ENST00000431286 310 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.24□□□□□ -1.57
PTPN9P43378 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.24□□□□□ -1.57
PTPN9P43378 TCEA1P1-201ENST00000449716 880 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 RN7SL799P-201ENST00000475891 298 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC074386.1-201ENST00000476560 767 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC008953.1-201ENST00000497334 318 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 UBE2V1P12-201ENST00000503954 474 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 CDH12P2-201ENST00000504393 298 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.24□□□□□ -1.57
PTPN9P43378 RNA5SP43-201ENST00000516559 110 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 RPL23AP53-201ENST00000521854 457 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC118942.1-201ENST00000529674 1035 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 ZKSCAN7P1-201ENST00000543668 673 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.24□□□□□ -1.57
PTPN9P43378 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AL109741.3-201ENST00000561748 592 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 AC023825.1-201ENST00000566704 1030 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL158211.1-201ENST00000566763 763 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC011840.5-201ENST00000582125 771 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC011374.2-201ENST00000607135 526 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 OR7A19P-201ENST00000608051 733 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL135786.2-201ENST00000608422 615 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL121612.2-201ENST00000612261 482 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC008147.4-201ENST00000617570 1204 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AL512427.1-201ENST00000618593 349 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC5.24□□□□□ -1.57
PTPN9P43378 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.24□□□□□ -1.57
PTPN9P43378 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
PTPN9P43378 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.24□□□□□ -1.57
PTPN9P43378 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
PTPN9P43378 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.24□□□□□ -1.57
PTPN9P43378 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTPN9P43378 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.23□□□□□ -1.57
PTPN9P43378 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTPN9P43378 RARSP1-201ENST00000542842 1418 ntBASIC5.23□□□□□ -1.57
PTPN9P43378 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.23□□□□□ -1.57
PTPN9P43378 AC063976.2-201ENST00000425667 3556 ntBASIC5.23□□□□□ -1.57
PTPN9P43378 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTPN9P43378 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTPN9P43378 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.23□□□□□ -1.57
PTPN9P43378 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTPN9P43378 RNU5B-4P-201ENST00000363508 111 ntBASIC5.23□□□□□ -1.57
PTPN9P43378 MIR765-201ENST00000390226 114 ntBASIC5.23□□□□□ -1.57
PTPN9P43378 SNORA79B-201ENST00000410557 148 ntBASIC5.23□□□□□ -1.57
PTPN9P43378 AC096533.1-201ENST00000411645 353 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms