Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SCN4AP35499 AC239868.2-201ENST00000564237 4527 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SCN4AP35499 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SCN4AP35499 AL391684.1-202ENST00000641293 1636 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SCN4AP35499 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SCN4AP35499 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SCN4AP35499 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 EIF2S2P5-201ENST00000457635 968 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 RPL7P15-201ENST00000461190 712 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 TRMT10BP1-201ENST00000519377 943 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 BNIP3P11-201ENST00000603878 563 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 OR2L1P-202ENST00000641567 1023 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SCN4AP35499 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.36□□□□□ -1.55
SCN4AP35499 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SCN4AP35499 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.36□□□□□ -1.55
SCN4AP35499 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SCN4AP35499 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SCN4AP35499 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.36□□□□□ -1.55
SCN4AP35499 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SCN4AP35499 KRR1P1-201ENST00000419430 803 ntBASIC5.36□□□□□ -1.55
SCN4AP35499 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.36□□□□□ -1.55
SCN4AP35499 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.36□□□□□ -1.55
SCN4AP35499 ISCUP1-201ENST00000454451 448 ntBASIC5.36□□□□□ -1.55
SCN4AP35499 snoU13.24-201ENST00000458998 104 ntBASIC5.36□□□□□ -1.55
SCN4AP35499 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.36□□□□□ -1.55
SCN4AP35499 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.36□□□□□ -1.55
SCN4AP35499 AC090181.2-201ENST00000602975 672 ntBASIC5.36□□□□□ -1.55
SCN4AP35499 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SCN4AP35499 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.36□□□□□ -1.55
SCN4AP35499 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.36□□□□□ -1.55
SCN4AP35499 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SCN4AP35499 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SCN4AP35499 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.36□□□□□ -1.55
SCN4AP35499 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.35□□□□□ -1.55
SCN4AP35499 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 RPL12P9-201ENST00000412942 488 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 CRYBB2P1-203ENST00000415709 538 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 RGS17P1-201ENST00000423358 553 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 AC091390.3-201ENST00000426478 338 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 AL445584.1-201ENST00000431451 330 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 FTH1P21-201ENST00000512179 511 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 SNORA74D-201ENST00000516404 141 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 AL121834.1-201ENST00000572284 509 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 RN7SL339P-201ENST00000580597 296 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 MIR6891-201ENST00000618788 93 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 AL034370.1-201ENST00000397254 1590 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 AL592182.3-201ENST00000642132 3304 ntBASIC5.35□□□□□ -1.55
SCN4AP35499 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SCN4AP35499 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.35□□□□□ -1.55
SCN4AP35499 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SCN4AP35499 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 MIR3065-201ENST00000390137 79 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SCN4AP35499 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.34□□□□□ -1.55
SCN4AP35499 AL121878.1-201ENST00000418638 859 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 MRPL50P1-201ENST00000431951 384 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AL356276.2-201ENST00000435919 558 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.34□□□□□ -1.55
SCN4AP35499 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
SCN4AP35499 PARP4P3-201ENST00000510265 317 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AC105233.3-201ENST00000531125 744 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.34□□□□□ -1.55
SCN4AP35499 RN7SL435P-201ENST00000584418 282 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AC091953.5-201ENST00000622919 233 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 AC015908.5-201ENST00000623289 343 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 LINC01808-202ENST00000641680 1116 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 THAP12P5-201ENST00000405864 2275 ntBASIC5.34□□□□□ -1.55
SCN4AP35499 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SCN4AP35499 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SCN4AP35499 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SCN4AP35499 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SCN4AP35499 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SCN4AP35499 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms