Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 OR51A6P-201ENST00000418680 1004 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXA9P31269 RPL7AP25-201ENST00000423357 805 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXA9P31269 RPL34P6-201ENST00000432390 345 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 RNU6-599P-201ENST00000459383 107 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 RNU6-1193P-201ENST00000459461 107 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 RN7SL303P-201ENST00000469773 251 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXA9P31269 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXA9P31269 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXA9P31269 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXA9P31269 FKBP1BP1-201ENST00000553366 325 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXA9P31269 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 BNIP3P41-202ENST00000616656 861 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 RNU6-368P-201ENST00000620928 107 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 RNU6-538P-201ENST00000622329 107 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 AC068724.3-201ENST00000625906 87 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXA9P31269 DDX18P5-201ENST00000534547 1306 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 AL929601.4-201ENST00000613011 1341 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 THAP12P8-201ENST00000447914 2115 ntBASIC4.85□□□□□ -1.63
HOXA9P31269 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXA9P31269 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA9P31269 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
HOXA9P31269 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
HOXA9P31269 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
HOXA9P31269 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
HOXA9P31269 AL731566.1-201ENST00000620490 1937 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 AL034370.1-201ENST00000397254 1590 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC135352.1-201ENST00000506173 1418 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 MFSD8-220ENST00000641243 1422 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HOXA9P31269 RPL23AP59-201ENST00000399415 461 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 ARL4AP5-201ENST00000404372 599 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA9P31269 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA9P31269 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXA9P31269 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC098799.3-201ENST00000506095 438 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA9P31269 RN7SKP5-201ENST00000517045 272 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA9P31269 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC105036.1-201ENST00000566222 271 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXA9P31269 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXA9P31269 AC015914.2-201ENST00000618167 288 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXA9P31269 AC025031.4-201ENST00000621248 3271 ntBASIC4.84□□□□□ -1.63
HOXA9P31269 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
HOXA9P31269 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXA9P31269 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.84□□□□□ -1.64
HOXA9P31269 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
HOXA9P31269 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA9P31269 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 MAPK10-304ENST00000641341 3984 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 SNORA68.2-201ENST00000391263 128 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 RPL7P57-201ENST00000423238 740 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 NPM1P33-201ENST00000438918 872 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 AL606490.8-201ENST00000441624 319 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 FHP1-201ENST00000442741 703 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 MTCYBP21-201ENST00000443300 1113 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA9P31269 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA9P31269 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA9P31269 AC106806.2-201ENST00000509365 500 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 OR8G5-201ENST00000524943 1041 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 AC005868.1-201ENST00000536421 331 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 DUX4L52-201ENST00000549363 777 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXA9P31269 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA9P31269 MIR3939-201ENST00000582614 106 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 AC096553.1-201ENST00000605169 829 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.83□□□□□ -1.64
HOXA9P31269 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms