Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.49□□□□□ -1.53
BDNFP23560 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AC090018.1-201ENST00000434369 367 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AL161722.2-201ENST00000434731 981 ntBASIC5.49□□□□□ -1.53
BDNFP23560 PSMD10P3-201ENST00000437000 448 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AC105402.2-201ENST00000438503 358 ntBASIC5.49□□□□□ -1.53
BDNFP23560 ELOCP3-201ENST00000439303 348 ntBASIC5.49□□□□□ -1.53
BDNFP23560 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 YWHAQP9-201ENST00000445891 512 ntBASIC5.49□□□□□ -1.53
BDNFP23560 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 DNAJB5P1-201ENST00000454004 806 ntBASIC5.49□□□□□ -1.53
BDNFP23560 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AP000797.2-201ENST00000475768 606 ntBASIC5.49□□□□□ -1.53
BDNFP23560 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.49□□□□□ -1.53
BDNFP23560 RPS12P31-201ENST00000491419 398 ntBASIC5.49□□□□□ -1.53
BDNFP23560 RPS24P16-201ENST00000497294 392 ntBASIC5.49□□□□□ -1.53
BDNFP23560 RPSAP51-201ENST00000497462 645 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 AC021193.1-201ENST00000511607 420 ntBASIC5.49□□□□□ -1.53
BDNFP23560 NDUFB4P12-201ENST00000513465 390 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.49□□□□□ -1.53
BDNFP23560 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.49□□□□□ -1.53
BDNFP23560 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.49□□□□□ -1.53
BDNFP23560 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.49□□□□□ -1.53
BDNFP23560 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.49□□□□□ -1.53
BDNFP23560 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 AC004948.1-201ENST00000609858 672 ntBASIC5.49□□□□□ -1.53
BDNFP23560 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 AC024595.1-201ENST00000623088 387 ntBASIC5.49□□□□□ -1.53
BDNFP23560 AP002799.1-201ENST00000623552 423 ntBASIC5.49□□□□□ -1.53
BDNFP23560 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
BDNFP23560 MIR6715B-201ENST00000637172 77 ntBASIC5.49□□□□□ -1.53
BDNFP23560 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.49□□□□□ -1.53
BDNFP23560 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
BDNFP23560 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 AL136964.1-201ENST00000622038 2990 ntBASIC5.49□□□□□ -1.53
BDNFP23560 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
BDNFP23560 AC063976.2-201ENST00000425667 3556 ntBASIC5.49□□□□□ -1.53
BDNFP23560 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 AC023421.1-201ENST00000590535 1785 ntBASIC5.48□□□□□ -1.53
BDNFP23560 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 SNURFL-201ENST00000309296 343 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RNU4-4P-201ENST00000364588 130 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 SNORA51.12-201ENST00000384448 134 ntBASIC5.48□□□□□ -1.53
BDNFP23560 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.48□□□□□ -1.53
BDNFP23560 RWDD4P2-201ENST00000426392 563 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RPS27AP6-201ENST00000427962 448 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RPL7AP49-201ENST00000429522 581 ntBASIC5.48□□□□□ -1.53
BDNFP23560 ETF1P3-201ENST00000430422 1160 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AL591438.1-201ENST00000433508 581 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AC092647.3-201ENST00000443044 633 ntBASIC5.48□□□□□ -1.53
BDNFP23560 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.48□□□□□ -1.53
BDNFP23560 AC016772.1-201ENST00000444170 1261 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 AC096992.1-201ENST00000459808 709 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AC097484.1-201ENST00000471148 389 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RN7SL826P-201ENST00000479724 288 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RWDD4P1-201ENST00000488019 565 ntBASIC5.48□□□□□ -1.53
BDNFP23560 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.48□□□□□ -1.53
BDNFP23560 AC004980.4-201ENST00000513375 203 ntBASIC5.48□□□□□ -1.53
BDNFP23560 RN7SKP147-201ENST00000517154 244 ntBASIC5.48□□□□□ -1.53
BDNFP23560 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.48□□□□□ -1.53
BDNFP23560 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.48□□□□□ -1.53
BDNFP23560 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.48□□□□□ -1.53
BDNFP23560 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.48□□□□□ -1.53
BDNFP23560 AP003117.1-201ENST00000602771 554 ntBASIC5.48□□□□□ -1.53
BDNFP23560 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.48□□□□□ -1.53
BDNFP23560 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
BDNFP23560 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.48□□□□□ -1.53
BDNFP23560 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BDNFP23560 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
BDNFP23560 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms