Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 SSR1P1-201ENST00000407630 814 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.33□□□□□ -1.72
COL5A1P20908 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.33□□□□□ -1.72
COL5A1P20908 OR2AH1P-201ENST00000425717 928 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.33□□□□□ -1.72
COL5A1P20908 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.33□□□□□ -1.72
COL5A1P20908 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.33□□□□□ -1.72
COL5A1P20908 HMGB3P16-201ENST00000508037 287 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 PGBD4P4-201ENST00000509673 613 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AC008958.1-201ENST00000511047 682 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.33□□□□□ -1.72
COL5A1P20908 HNRNPCP4-201ENST00000571636 900 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 AC006116.5-201ENST00000591936 559 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AC022106.2-201ENST00000620114 757 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AC039056.2-201ENST00000622261 511 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 AC015804.1-201ENST00000622935 435 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 AP002512.4-202ENST00000641599 4530 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 AC097461.1-201ENST00000568928 2821 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.33□□□□□ -1.72
COL5A1P20908 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 UBBP2-201ENST00000376781 231 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 MIR3065-201ENST00000390137 79 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 RPS27AP11-201ENST00000402798 447 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 CYCSP10-201ENST00000417973 294 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A1P20908 RPL23AP52-201ENST00000439311 478 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 RPL21P89-201ENST00000444021 467 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 snoU13.24-201ENST00000458998 104 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AC108751.2-201ENST00000469993 231 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A1P20908 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A1P20908 IPO5P1-202ENST00000600039 287 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 IMMP1LP1-201ENST00000605170 488 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC020634.1-201ENST00000608701 549 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC234782.5-201ENST00000617723 324 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 MIR6075-201ENST00000620782 95 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AL139254.3-201ENST00000641097 674 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 MAPK10-349ENST00000641767 3661 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL5A1P20908 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 AP005435.3-201ENST00000531260 3198 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AL035696.2-201ENST00000407941 709 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 RN7SKP33-201ENST00000410942 340 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AC069157.1-201ENST00000421749 137 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A1P20908 AL935212.3-201ENST00000450729 284 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.32□□□□□ -1.72
COL5A1P20908 BPIFA4P-203ENST00000603168 689 ntBASIC4.32□□□□□ -1.72
COL5A1P20908 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A1P20908 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A1P20908 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A1P20908 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.31□□□□□ -1.72
COL5A1P20908 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
COL5A1P20908 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.31□□□□□ -1.72
COL5A1P20908 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms