Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HMGA1P17096 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HMGA1P17096 MIR383-201ENST00000362257 73 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HMGA1P17096 AL359643.1-201ENST00000404109 423 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AL358176.3-201ENST00000420757 454 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AL157831.1-201ENST00000426134 473 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HMGA1P17096 DDX39BP2-208ENST00000453923 258 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.56□□□□□ -1.68
HMGA1P17096 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AC020898.1-201ENST00000474167 787 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 RN7SL812P-201ENST00000493791 279 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 MTCO1P35-201ENST00000515270 228 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 AC010201.1-201ENST00000605051 540 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AC025175.1-201ENST00000606482 759 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AL021997.2-201ENST00000615674 271 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 RNA5SP196-201ENST00000625967 102 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 MIR492-201ENST00000638676 116 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 AC003985.2-201ENST00000562268 1669 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HMGA1P17096 AC091046.3-201ENST00000631455 1574 ntBASIC4.56□□□□□ -1.68
HMGA1P17096 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.56□□□□□ -1.68
HMGA1P17096 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HMGA1P17096 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 AL133268.1-201ENST00000405676 1401 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 LARP1BP1-201ENST00000506036 1359 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 RNA5SP307-201ENST00000362863 116 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 RPS26P8-201ENST00000393490 348 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 SNORA11-201ENST00000408789 128 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 RNA5SP317-201ENST00000410176 116 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 SNORA74C-2-201ENST00000411179 201 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 RNA5SP311-201ENST00000411290 116 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 MFSD13B-201ENST00000420133 1290 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 RPEP2-201ENST00000432149 701 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 OR4C10P-201ENST00000434991 931 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 RPL35AP15-201ENST00000468042 339 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AC108751.2-201ENST00000469993 231 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HMGA1P17096 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 RNA5SP315-201ENST00000516340 116 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 RNA5SP312-201ENST00000517068 116 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.55□□□□□ -1.68
HMGA1P17096 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGA1P17096 AL161729.3-201ENST00000603533 673 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AL160290.3-201ENST00000604869 165 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AL591034.3-201ENST00000605511 685 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AC023043.4-201ENST00000612081 449 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AC234782.5-201ENST00000617723 324 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 AL445363.3-201ENST00000623080 671 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 TMEM30CP-203ENST00000637814 1035 ntBASIC4.55□□□□□ -1.68
HMGA1P17096 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.55□□□□□ -1.68
HMGA1P17096 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
HMGA1P17096 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGA1P17096 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
HMGA1P17096 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 HSPD1P14-201ENST00000432666 1618 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AL672167.1-203ENST00000641299 2975 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.54□□□□□ -1.68
HMGA1P17096 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HMGA1P17096 ATP5F1P2-201ENST00000398143 760 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 RPS27AP11-201ENST00000402798 447 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGA1P17096 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 EIF4A1P1-201ENST00000420241 934 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 VDAC1P6-201ENST00000430062 855 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.54□□□□□ -1.68
HMGA1P17096 AL512326.1-201ENST00000443050 721 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGA1P17096 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGA1P17096 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.54□□□□□ -1.68
HMGA1P17096 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms