Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
ZC3H4Q9UPT8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
ZC3H4Q9UPT8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
ZC3H4Q9UPT8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 HBZP1-201ENST00000354915 429 ntBASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 IFNL4P1-201ENST00000607083 540 ntBASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.62■■□□□ 1.37
ZC3H4Q9UPT8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 AC104692.2-201ENST00000603054 253 ntBASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
ZC3H4Q9UPT8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 AC106795.1-205ENST00000512851 1056 ntBASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 AL160237.2-201ENST00000556165 472 ntBASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 AL121672.3-201ENST00000608644 468 ntBASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.6■■□□□ 1.37
ZC3H4Q9UPT8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 AL031008.1-201ENST00000619963 541 ntBASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 KRT16P6-202ENST00000425692 1426 ntBASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
ZC3H4Q9UPT8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
ZC3H4Q9UPT8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.58■■□□□ 1.36
ZC3H4Q9UPT8 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms