Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 TREX1-205ENST00000625293 1783 ntBASIC18.78■□□□□ 0.6
VPS4AQ9UN37 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 SOX15-203ENST00000570788 1093 ntBASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 AC069544.1-201ENST00000609399 999 ntBASIC18.78■□□□□ 0.6
VPS4AQ9UN37 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4AQ9UN37 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AP001412.1-201ENST00000608405 714 ntBASIC18.77■□□□□ 0.6
VPS4AQ9UN37 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AC133561.5-201ENST00000635547 218 ntBASIC18.77■□□□□ 0.6
VPS4AQ9UN37 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4AQ9UN37 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
VPS4AQ9UN37 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4AQ9UN37 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
VPS4AQ9UN37 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS4AQ9UN37 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.59
VPS4AQ9UN37 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HLA-G-202ENST00000376815 851 ntBASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HLA-G-203ENST00000376818 1127 ntBASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 AC012618.2-201ENST00000428058 849 ntBASIC18.76■□□□□ 0.59
VPS4AQ9UN37 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS4AQ9UN37 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4AQ9UN37 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS4AQ9UN37 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS4AQ9UN37 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms