Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 TFP1-202ENST00000475455 1573 ntBASIC19.88■□□□□ 0.77
TTC28Q96AY4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 MIR662-201ENST00000384847 95 ntBASIC19.87■□□□□ 0.77
TTC28Q96AY4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 RPL13AP23-201ENST00000480739 586 ntBASIC19.87■□□□□ 0.77
TTC28Q96AY4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TTC28Q96AY4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TTC28Q96AY4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 UPF3AP3-201ENST00000420996 769 ntBASIC19.87■□□□□ 0.77
TTC28Q96AY4 GPX1P2-201ENST00000429271 606 ntBASIC19.87■□□□□ 0.77
TTC28Q96AY4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.87■□□□□ 0.77
TTC28Q96AY4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TTC28Q96AY4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 AC009065.1-201ENST00000564055 1225 ntBASIC19.86■□□□□ 0.77
TTC28Q96AY4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 AF186996.4-201ENST00000467186 377 ntBASIC19.86■□□□□ 0.77
TTC28Q96AY4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TTC28Q96AY4 AC018553.1-201ENST00000616682 1458 ntBASIC19.86■□□□□ 0.77
TTC28Q96AY4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.86■□□□□ 0.77
TTC28Q96AY4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 RFPL4AP1-201ENST00000530883 850 ntBASIC19.85■□□□□ 0.77
TTC28Q96AY4 AC139887.3-201ENST00000568585 713 ntBASIC19.85■□□□□ 0.77
TTC28Q96AY4 RNF126P1-202ENST00000569893 925 ntBASIC19.85■□□□□ 0.77
TTC28Q96AY4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.85■□□□□ 0.77
TTC28Q96AY4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TTC28Q96AY4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 AC104819.1-201ENST00000504587 486 ntBASIC19.84■□□□□ 0.77
TTC28Q96AY4 IGHV3-22-201ENST00000520721 359 ntBASIC19.84■□□□□ 0.77
TTC28Q96AY4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 FAM99A-202ENST00000538190 1989 ntBASIC19.84■□□□□ 0.77
TTC28Q96AY4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.84■□□□□ 0.77
TTC28Q96AY4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TTC28Q96AY4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TTC28Q96AY4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.83■□□□□ 0.77
TTC28Q96AY4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TTC28Q96AY4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.83■□□□□ 0.77
TTC28Q96AY4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.83■□□□□ 0.77
TTC28Q96AY4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.83■□□□□ 0.77
TTC28Q96AY4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.83■□□□□ 0.77
TTC28Q96AY4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms