Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HSPG2P98160 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC12.11□□□□□ -0.47
HSPG2P98160 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC12.11□□□□□ -0.47
HSPG2P98160 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 MIR662-201ENST00000384847 95 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 AL035633.1-201ENST00000406139 838 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.11□□□□□ -0.47
HSPG2P98160 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.11□□□□□ -0.47
HSPG2P98160 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.11□□□□□ -0.47
HSPG2P98160 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 LINC00265-3P-201ENST00000447588 903 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 BX276092.5-203ENST00000456199 560 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC12.11□□□□□ -0.47
HSPG2P98160 ECEL1P1-201ENST00000373592 1742 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HSPG2P98160 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC12.11□□□□□ -0.47
HSPG2P98160 AL121772.3-201ENST00000610840 674 ntBASIC12.11□□□□□ -0.47
HSPG2P98160 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC12.11□□□□□ -0.47
HSPG2P98160 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
HSPG2P98160 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HSPG2P98160 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC12.1□□□□□ -0.47
HSPG2P98160 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC12.1□□□□□ -0.47
HSPG2P98160 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 POLD2P1-201ENST00000511220 997 ntBASIC12.1□□□□□ -0.47
HSPG2P98160 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.1□□□□□ -0.47
HSPG2P98160 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.1□□□□□ -0.47
HSPG2P98160 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.1□□□□□ -0.47
HSPG2P98160 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 REXO1L6P-202ENST00000619970 1078 ntBASIC12.1□□□□□ -0.47
HSPG2P98160 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HSPG2P98160 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC12.1□□□□□ -0.47
HSPG2P98160 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HSPG2P98160 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
HSPG2P98160 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
HSPG2P98160 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HSPG2P98160 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 HLA-F-220ENST00000434407 884 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.09□□□□□ -0.47
HSPG2P98160 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC12.09□□□□□ -0.47
HSPG2P98160 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 AL162741.1-201ENST00000565563 1558 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HSPG2P98160 TBC1D3P2-202ENST00000577902 1649 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 RASA4DP-201ENST00000460726 1199 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC12.09□□□□□ -0.47
HSPG2P98160 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms