Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
MSH6P52701 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
MSH6P52701 KRT8P8-201ENST00000434750 1448 ntBASIC27.05■■□□□ 1.92
MSH6P52701 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC27.05■■□□□ 1.92
MSH6P52701 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
MSH6P52701 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC27.04■■□□□ 1.92
MSH6P52701 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC27.04■■□□□ 1.92
MSH6P52701 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC27.04■■□□□ 1.92
MSH6P52701 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC27.04■■□□□ 1.92
MSH6P52701 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC27.03■■□□□ 1.92
MSH6P52701 NUS1P1-201ENST00000446295 882 ntBASIC27.03■■□□□ 1.92
MSH6P52701 BX276092.5-203ENST00000456199 560 ntBASIC27.03■■□□□ 1.92
MSH6P52701 EMBP1-201ENST00000458200 901 ntBASIC27.03■■□□□ 1.92
MSH6P52701 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC27.03■■□□□ 1.92
MSH6P52701 AC104692.2-201ENST00000603054 253 ntBASIC27.03■■□□□ 1.92
MSH6P52701 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC27.03■■□□□ 1.92
MSH6P52701 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
MSH6P52701 AC016734.2-201ENST00000624325 1377 ntBASIC27.02■■□□□ 1.92
MSH6P52701 AP002383.4-201ENST00000442518 975 ntBASIC27.02■■□□□ 1.92
MSH6P52701 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC27.02■■□□□ 1.92
MSH6P52701 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC27.02■■□□□ 1.92
MSH6P52701 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC27.02■■□□□ 1.92
MSH6P52701 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC27.02■■□□□ 1.92
MSH6P52701 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC27.02■■□□□ 1.92
MSH6P52701 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
MSH6P52701 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
MSH6P52701 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC27.01■■□□□ 1.92
MSH6P52701 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC27.01■■□□□ 1.91
MSH6P52701 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC27.01■■□□□ 1.91
MSH6P52701 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC27.01■■□□□ 1.91
MSH6P52701 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
MSH6P52701 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
MSH6P52701 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC27■■□□□ 1.91
MSH6P52701 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC27■■□□□ 1.91
MSH6P52701 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC27■■□□□ 1.91
MSH6P52701 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC27■■□□□ 1.91
MSH6P52701 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC27■■□□□ 1.91
MSH6P52701 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC27■■□□□ 1.91
MSH6P52701 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
MSH6P52701 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC27■■□□□ 1.91
MSH6P52701 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
MSH6P52701 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
MSH6P52701 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC27■■□□□ 1.91
MSH6P52701 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH6P52701 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 AL160237.2-201ENST00000556165 472 ntBASIC26.99■■□□□ 1.91
MSH6P52701 AC011498.5-201ENST00000592027 486 ntBASIC26.99■■□□□ 1.91
MSH6P52701 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
MSH6P52701 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH6P52701 AC079834.2-201ENST00000609776 1949 ntBASIC26.99■■□□□ 1.91
MSH6P52701 BX119927.1-201ENST00000636596 1552 ntBASIC26.99■■□□□ 1.91
MSH6P52701 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC26.98■■□□□ 1.91
MSH6P52701 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
MSH6P52701 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC26.98■■□□□ 1.91
MSH6P52701 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC26.98■■□□□ 1.91
MSH6P52701 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
MSH6P52701 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC26.98■■□□□ 1.91
MSH6P52701 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC26.98■■□□□ 1.91
MSH6P52701 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC26.98■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms