Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGA1P17096 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGA1P17096 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGA1P17096 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.23■□□□□ 0.83
HMGA1P17096 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.23■□□□□ 0.83
HMGA1P17096 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
HMGA1P17096 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGA1P17096 AC128688.1-201ENST00000487626 519 ntBASIC20.23■□□□□ 0.83
HMGA1P17096 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGA1P17096 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGA1P17096 AL445228.2-201ENST00000605589 952 ntBASIC20.23■□□□□ 0.83
HMGA1P17096 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGA1P17096 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGA1P17096 AC112907.3-201ENST00000577781 2400 ntBASIC20.23■□□□□ 0.83
HMGA1P17096 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGA1P17096 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HMGA1P17096 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
HMGA1P17096 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGA1P17096 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 AC104076.2-201ENST00000448912 469 ntBASIC20.22■□□□□ 0.83
HMGA1P17096 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.22■□□□□ 0.83
HMGA1P17096 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGA1P17096 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGA1P17096 AL023803.3-201ENST00000615559 522 ntBASIC20.22■□□□□ 0.83
HMGA1P17096 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGA1P17096 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGA1P17096 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
HMGA1P17096 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGA1P17096 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 SLC25A1P2-201ENST00000430693 912 ntBASIC20.21■□□□□ 0.83
HMGA1P17096 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 AL049597.2-201ENST00000565575 961 ntBASIC20.21■□□□□ 0.83
HMGA1P17096 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGA1P17096 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGA1P17096 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HMGA1P17096 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HMGA1P17096 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HMGA1P17096 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGA1P17096 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGA1P17096 KRT18P35-201ENST00000510488 1269 ntBASIC20.2■□□□□ 0.82
HMGA1P17096 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.2■□□□□ 0.82
HMGA1P17096 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
HMGA1P17096 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HMGA1P17096 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HMGA1P17096 AC116562.4-202ENST00000641738 218 ntBASIC20.2■□□□□ 0.82
HMGA1P17096 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGA1P17096 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGA1P17096 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
HMGA1P17096 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.2■□□□□ 0.82
HMGA1P17096 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGA1P17096 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGA1P17096 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 AC092338.2-201ENST00000568827 1415 ntBASIC20.19■□□□□ 0.82
HMGA1P17096 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.19■□□□□ 0.82
HMGA1P17096 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGA1P17096 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms