Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VCANP13611 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.22■□□□□ 0.83
VCANP13611 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.21■□□□□ 0.83
VCANP13611 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VCANP13611 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.21■□□□□ 0.83
VCANP13611 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
VCANP13611 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 MIR940-201ENST00000401276 94 ntBASIC20.21■□□□□ 0.83
VCANP13611 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.21■□□□□ 0.83
VCANP13611 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.21■□□□□ 0.83
VCANP13611 AL121672.3-201ENST00000608644 468 ntBASIC20.21■□□□□ 0.83
VCANP13611 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.21■□□□□ 0.83
VCANP13611 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.21■□□□□ 0.83
VCANP13611 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.21■□□□□ 0.83
VCANP13611 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.21■□□□□ 0.83
VCANP13611 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.21■□□□□ 0.83
VCANP13611 TPSP2-201ENST00000561760 610 ntBASIC20.21■□□□□ 0.83
VCANP13611 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCANP13611 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VCANP13611 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VCANP13611 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.2■□□□□ 0.82
VCANP13611 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.2■□□□□ 0.82
VCANP13611 AC106730.1-201ENST00000566722 1090 ntBASIC20.2■□□□□ 0.82
VCANP13611 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 REXO1L6P-202ENST00000619970 1078 ntBASIC20.2■□□□□ 0.82
VCANP13611 KRT16P6-202ENST00000425692 1426 ntBASIC20.2■□□□□ 0.82
VCANP13611 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.2■□□□□ 0.82
VCANP13611 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCANP13611 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.2■□□□□ 0.82
VCANP13611 KRT8P36-201ENST00000489121 1440 ntBASIC20.19■□□□□ 0.82
VCANP13611 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.19■□□□□ 0.82
VCANP13611 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.19■□□□□ 0.82
VCANP13611 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 SAPCD2P3-201ENST00000455031 850 ntBASIC20.19■□□□□ 0.82
VCANP13611 AL691403.2-201ENST00000618460 490 ntBASIC20.19■□□□□ 0.82
VCANP13611 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
VCANP13611 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCANP13611 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
VCANP13611 AC098831.1-202ENST00000438821 336 ntBASIC20.18■□□□□ 0.82
VCANP13611 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.18■□□□□ 0.82
VCANP13611 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VCANP13611 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 SART3-203ENST00000546611 1184 ntBASIC20.18■□□□□ 0.82
VCANP13611 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCANP13611 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.18■□□□□ 0.82
VCANP13611 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.18■□□□□ 0.82
VCANP13611 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VCANP13611 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.17■□□□□ 0.82
VCANP13611 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VCANP13611 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.17■□□□□ 0.82
VCANP13611 AP000867.3-201ENST00000524675 377 ntBASIC20.17■□□□□ 0.82
VCANP13611 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.17■□□□□ 0.82
VCANP13611 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.17■□□□□ 0.82
VCANP13611 AC239800.4-201ENST00000603712 296 ntBASIC20.17■□□□□ 0.82
VCANP13611 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.17■□□□□ 0.82
VCANP13611 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 AL162741.1-201ENST00000565563 1558 ntBASIC20.17■□□□□ 0.82
VCANP13611 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.17■□□□□ 0.82
VCANP13611 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms