Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 BX276092.5-203ENST00000456199 560 ntBASIC18.64■□□□□ 0.57
CNOT1A5YKK6 KRT18P58-201ENST00000527480 1120 ntBASIC18.64■□□□□ 0.57
CNOT1A5YKK6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.64■□□□□ 0.57
CNOT1A5YKK6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 HLA-F-220ENST00000434407 884 ntBASIC18.63■□□□□ 0.57
CNOT1A5YKK6 AC092183.1-201ENST00000469884 875 ntBASIC18.63■□□□□ 0.57
CNOT1A5YKK6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 FAM220CP-201ENST00000395253 831 ntBASIC18.63■□□□□ 0.57
CNOT1A5YKK6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNOT1A5YKK6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 RNA5SP419-201ENST00000515908 135 ntBASIC18.62■□□□□ 0.57
CNOT1A5YKK6 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 MIR574-201ENST00000385209 96 ntBASIC18.62■□□□□ 0.57
CNOT1A5YKK6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 LINC02084-201ENST00000606069 1096 ntBASIC18.62■□□□□ 0.57
CNOT1A5YKK6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.62■□□□□ 0.57
CNOT1A5YKK6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 AC011498.5-201ENST00000592027 486 ntBASIC18.61■□□□□ 0.57
CNOT1A5YKK6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 LINC01465-201ENST00000408887 1940 ntBASIC18.61■□□□□ 0.57
CNOT1A5YKK6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 KRT8P41-201ENST00000533985 1514 ntBASIC18.61■□□□□ 0.57
CNOT1A5YKK6 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CNOT1A5YKK6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 MIR1233-2-201ENST00000408138 82 ntBASIC18.6■□□□□ 0.57
CNOT1A5YKK6 MIR1233-1-201ENST00000408722 82 ntBASIC18.6■□□□□ 0.57
CNOT1A5YKK6 RASA4DP-201ENST00000460726 1199 ntBASIC18.6■□□□□ 0.57
CNOT1A5YKK6 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CNOT1A5YKK6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms