Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNA5SP30-201ENST00000365552 115 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 SNORD65C-201ENST00000390962 71 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL021331.1-201ENST00000402817 582 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RPL7P27-201ENST00000403775 720 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 HMGB1P13-201ENST00000406019 642 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RNA5SP296-201ENST00000410523 111 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RNU4-22P-201ENST00000411058 166 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 GPS2P1-201ENST00000411761 986 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RPS24P7-201ENST00000416921 246 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 MTCO3P4-201ENST00000419236 787 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 SLC35E1P1-201ENST00000419313 864 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 OR2X1P-201ENST00000421144 687 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RPL7P56-201ENST00000429441 717 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 HMGB3P10-201ENST00000434734 572 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 NDUFB4P8-201ENST00000435351 367 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL596266.1-201ENST00000448132 400 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RPS23P6-201ENST00000466136 431 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RPL35AP19-201ENST00000469425 329 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC079841.1-201ENST00000481228 950 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 UBA52P7-201ENST00000486088 380 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 IGLV3-24-201ENST00000517477 197 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 NRBF2P4-201ENST00000520874 850 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 OR5AK3P-201ENST00000527486 1297 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LSM3P2-201ENST00000551246 273 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC009097.3-201ENST00000563557 1018 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC005412.1-201ENST00000580812 1049 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 MIR7853-201ENST00000584820 132 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC008751.2-201ENST00000597885 980 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC010245.2-201ENST00000606908 1167 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL138478.1-201ENST00000612252 832 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL139407.1-201ENST00000613826 1175 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC073569.3-201ENST00000619055 682 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AL121895.2-201ENST00000619558 447 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC074140.1-201ENST00000621617 208 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 UGT2B26P-201ENST00000508672 1613 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC114786.1-201ENST00000512892 1415 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC006206.1-201ENST00000544842 3387 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RNU4-51P-201ENST00000364206 140 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RNU4-40P-201ENST00000364351 143 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RPS7P9-201ENST00000414704 586 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 MTND4P3-201ENST00000417829 541 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC113412.1-201ENST00000425840 504 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 CNOT7P2-201ENST00000441051 832 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC092685.1-201ENST00000447960 1243 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RBMY2TP-201ENST00000451162 947 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AURKAPS1-201ENST00000451805 1212 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC096992.1-201ENST00000459808 709 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RPSAP50-201ENST00000481955 852 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms