Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AL672167.2-201ENST00000377164 879 ntBASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AC079809.1-201ENST00000415468 276 ntBASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AK4P6-201ENST00000505168 528 ntBASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 MIR3158-1-201ENST00000583596 81 ntBASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 AL023881.1-201ENST00000621088 301 ntBASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SHROOM4Q9ULL8 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 LCMT1-AS2-202ENST00000565214 5666 ntBASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 RNU11-201ENST00000387069 134 ntBASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 OR13Z1P-201ENST00000416141 834 ntBASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 AL360012.1-201ENST00000602813 131 ntBASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 AC090948.2-201ENST00000607363 564 ntBASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
SHROOM4Q9ULL8 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 STX3-208ENST00000641815 3236 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 MIR208A-201ENST00000362287 71 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL590762.2-201ENST00000395798 571 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AC140479.3-201ENST00000418944 1126 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 DUX4L52-201ENST00000549363 777 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AC025884.1-201ENST00000556034 378 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL592494.3-201ENST00000609485 464 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL159169.2-201ENST00000610061 1269 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 Z95327.3-201ENST00000610385 572 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 AL158062.1-201ENST00000619632 745 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 ACTR3BP5-201ENST00000448440 1479 ntBASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC8.93□□□□□ -0.98
SHROOM4Q9ULL8 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 MYL12BP2-201ENST00000503948 512 ntBASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 AGGF1P9-201ENST00000561884 913 ntBASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 MTND2P13-201ENST00000577438 1039 ntBASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 AL118556.2-201ENST00000614375 824 ntBASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 OR51C1P-202ENST00000641159 1444 ntBASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SHROOM4Q9ULL8 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 ARL4AP5-201ENST00000404372 599 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 AC013470.3-201ENST00000420252 1194 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 MTCO1P45-201ENST00000431457 267 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 BUD31P2-201ENST00000449374 300 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 RN7SL810P-201ENST00000493031 276 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 AC104997.1-201ENST00000519761 717 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 MTCO1P49-201ENST00000523429 802 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 SNORA74C-1-201ENST00000580726 201 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 AC011477.5-201ENST00000586571 259 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 SNX18P1Y-201ENST00000616231 511 ntBASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms