Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 AC006566.1-201ENST00000608943 513 ntBASIC6.55□□□□□ -1.36
LIG3P49916 MIR7973-1-201ENST00000614683 76 ntBASIC6.55□□□□□ -1.36
LIG3P49916 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 AC114546.4-201ENST00000624413 369 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
LIG3P49916 AC135352.1-201ENST00000506173 1418 ntBASIC6.55□□□□□ -1.36
LIG3P49916 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 DDX18P4-201ENST00000511690 1966 ntBASIC6.55□□□□□ -1.36
LIG3P49916 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 AC103591.2-201ENST00000265259 766 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC016716.1-201ENST00000265882 708 ntBASIC6.54□□□□□ -1.36
LIG3P49916 OR9G4-201ENST00000302957 984 ntBASIC6.54□□□□□ -1.36
LIG3P49916 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 Y_RNA.88-201ENST00000363029 99 ntBASIC6.54□□□□□ -1.36
LIG3P49916 SUGT1P1-201ENST00000379514 476 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC007066.1-201ENST00000392902 381 ntBASIC6.54□□□□□ -1.36
LIG3P49916 EI24P3-201ENST00000399046 1062 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AL590290.1-201ENST00000405336 380 ntBASIC6.54□□□□□ -1.36
LIG3P49916 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 AC234781.4-201ENST00000419384 244 ntBASIC6.54□□□□□ -1.36
LIG3P49916 IPMKP1-201ENST00000425988 855 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 AL365184.2-201ENST00000431139 435 ntBASIC6.54□□□□□ -1.36
LIG3P49916 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 FMO7P-201ENST00000436045 768 ntBASIC6.54□□□□□ -1.36
LIG3P49916 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 TXNP5-201ENST00000441043 315 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 AC016908.1-201ENST00000442571 1219 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 AC108463.1-201ENST00000450258 347 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 FGF7P6-202ENST00000451282 293 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.54□□□□□ -1.36
LIG3P49916 AC004924.1-201ENST00000480160 781 ntBASIC6.54□□□□□ -1.36
LIG3P49916 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 PGBD4P4-201ENST00000509673 613 ntBASIC6.54□□□□□ -1.36
LIG3P49916 RNU6-885P-201ENST00000516607 104 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 IGHV3-32-201ENST00000519182 355 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.54□□□□□ -1.36
LIG3P49916 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.54□□□□□ -1.36
LIG3P49916 MED28P5-201ENST00000528254 438 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 EEF1B2P4-201ENST00000551398 348 ntBASIC6.54□□□□□ -1.36
LIG3P49916 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 TPRKBP2-201ENST00000565969 475 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC092325.1-201ENST00000566449 554 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC138915.2-201ENST00000569776 97 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC083760.1-201ENST00000589621 670 ntBASIC6.54□□□□□ -1.36
LIG3P49916 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.54□□□□□ -1.36
LIG3P49916 AC015871.2-201ENST00000603605 948 ntBASIC6.54□□□□□ -1.36
LIG3P49916 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC6.54□□□□□ -1.36
LIG3P49916 MIR6780B-201ENST00000610307 79 ntBASIC6.54□□□□□ -1.36
LIG3P49916 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC234782.5-201ENST00000617723 324 ntBASIC6.54□□□□□ -1.36
LIG3P49916 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 AC009120.7-201ENST00000623452 780 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC021106.3-201ENST00000623925 531 ntBASIC6.54□□□□□ -1.36
LIG3P49916 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.54□□□□□ -1.36
LIG3P49916 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.54□□□□□ -1.36
LIG3P49916 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.54□□□□□ -1.36
LIG3P49916 RNF6P1-201ENST00000444889 1784 ntBASIC6.54□□□□□ -1.36
LIG3P49916 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIG3P49916 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms