Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC024220.1-201ENST00000603675 484 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.72□□□□□ -1.49
COL18A1P39060 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
COL18A1P39060 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 AC140134.1-201ENST00000511830 3544 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 SNORA62.3-201ENST00000365110 153 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 RPL37P1-201ENST00000432310 284 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 OR7E10P-201ENST00000526420 991 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 AP003400.2-201ENST00000624036 666 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL18A1P39060 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL18A1P39060 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL18A1P39060 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.71□□□□□ -1.49
COL18A1P39060 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL18A1P39060 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL18A1P39060 RN7SKP182-201ENST00000410772 298 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 AC069157.1-201ENST00000421749 137 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 AC007389.2-201ENST00000434630 306 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 PRSS3P4-201ENST00000453323 162 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 DSTNP2-201ENST00000504533 515 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.71□□□□□ -1.5
COL18A1P39060 AC087499.8-201ENST00000578406 226 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 AC010480.1-201ENST00000624823 684 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
COL18A1P39060 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.5
COL18A1P39060 AL627171.1-201ENST00000618845 1308 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 NXPH1-205ENST00000602349 1953 ntBASIC5.71□□□□□ -1.5
COL18A1P39060 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL18A1P39060 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL18A1P39060 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL18A1P39060 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
COL18A1P39060 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 AP000357.1-201ENST00000409926 1165 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 PTMAP3-201ENST00000447474 330 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 ATP1B1P1-201ENST00000509767 915 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL18A1P39060 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 AGGF1P6-201ENST00000569213 976 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AC005520.3-201ENST00000602874 370 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 AC007546.2-201ENST00000623996 360 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL18A1P39060 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL18A1P39060 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL18A1P39060 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL18A1P39060 SNORA11.2-201ENST00000408318 127 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 RNU6ATAC-201ENST00000408749 126 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 RPL35AP15-201ENST00000468042 339 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AC022336.1-201ENST00000475510 337 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 TRMT10BP1-201ENST00000519377 943 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.7□□□□□ -1.5
COL18A1P39060 GTF2IP22-201ENST00000554443 182 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AC091178.1-203ENST00000584586 279 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 Z98200.1-201ENST00000607298 470 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 AL121772.2-201ENST00000614331 297 ntBASIC5.7□□□□□ -1.5
COL18A1P39060 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL18A1P39060 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.69□□□□□ -1.5
COL18A1P39060 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL18A1P39060 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 OR11H4-201ENST00000315409 1082 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 RNU1-20P-201ENST00000363314 162 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 RNA5SP513-201ENST00000364648 118 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 RNU11-4P-201ENST00000391149 133 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 OR8F1P-201ENST00000425243 930 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 NMNAT1P2-201ENST00000435192 860 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.69□□□□□ -1.5
COL18A1P39060 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.69□□□□□ -1.5
COL18A1P39060 RNA5SP230-201ENST00000517039 122 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.69□□□□□ -1.5
COL18A1P39060 TVP23BP1-201ENST00000557500 617 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms