Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 MTCO1P7-201ENST00000419523 1542 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
MSX2P35548 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 RNU6-694P-201ENST00000364071 147 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RNA5SP485-201ENST00000365053 119 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RNA5SP77-201ENST00000365394 120 ntBASIC5.53□□□□□ -1.52
MSX2P35548 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
MSX2P35548 AC104297.1-201ENST00000393779 870 ntBASIC5.53□□□□□ -1.52
MSX2P35548 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 AC136624.1-201ENST00000400791 413 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RN7SKP144-201ENST00000411108 279 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 AL590806.1-201ENST00000415818 853 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AL133482.1-201ENST00000415988 498 ntBASIC5.53□□□□□ -1.52
MSX2P35548 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 PAICSP7-201ENST00000419829 962 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RPL24P2-201ENST00000421023 475 ntBASIC5.53□□□□□ -1.52
MSX2P35548 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 OR5AW1P-201ENST00000426334 1006 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 RPSAP32-201ENST00000432681 526 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AL590103.1-201ENST00000434488 307 ntBASIC5.53□□□□□ -1.52
MSX2P35548 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 USP9YP35-201ENST00000435696 412 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 CYCSP51-201ENST00000443545 318 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC097499.1-201ENST00000444277 208 ntBASIC5.53□□□□□ -1.52
MSX2P35548 COX6CP2-201ENST00000444980 225 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AC097359.1-201ENST00000447946 463 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC090602.1-201ENST00000469695 252 ntBASIC5.53□□□□□ -1.52
MSX2P35548 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 AC083795.1-201ENST00000491760 320 ntBASIC5.53□□□□□ -1.52
MSX2P35548 SNRPCP11-201ENST00000492453 205 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RN7SL649P-201ENST00000496974 275 ntBASIC5.53□□□□□ -1.52
MSX2P35548 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 GTF2F2P1-201ENST00000511083 675 ntBASIC5.53□□□□□ -1.52
MSX2P35548 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 IGHV3-63-201ENST00000518422 341 ntBASIC5.53□□□□□ -1.52
MSX2P35548 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AL121594.2-201ENST00000541658 472 ntBASIC5.53□□□□□ -1.52
MSX2P35548 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AC245505.1-201ENST00000556398 224 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC012414.6-201ENST00000568241 401 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AL163952.1-202ENST00000569625 600 ntBASIC5.53□□□□□ -1.52
MSX2P35548 ROCK1P1-201ENST00000573767 549 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC138207.8-204ENST00000579588 527 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 AC068790.7-201ENST00000602347 528 ntBASIC5.53□□□□□ -1.52
MSX2P35548 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX2P35548 AL391497.1-201ENST00000608671 547 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC008498.1-201ENST00000613012 531 ntBASIC5.53□□□□□ -1.52
MSX2P35548 RFPL4AP6-201ENST00000616792 846 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC022509.4-201ENST00000621404 572 ntBASIC5.53□□□□□ -1.52
MSX2P35548 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX2P35548 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.53□□□□□ -1.52
MSX2P35548 SAMMSON-209ENST00000641222 1100 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 AC004520.1-201ENST00000608362 1413 ntBASIC5.53□□□□□ -1.52
MSX2P35548 AC073544.1-201ENST00000600110 1595 ntBASIC5.53□□□□□ -1.52
MSX2P35548 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 AC015689.2-201ENST00000528172 1738 ntBASIC5.53□□□□□ -1.52
MSX2P35548 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
MSX2P35548 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
MSX2P35548 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms