Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC139495.1-202ENST00000513164 354 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 RN7SL600P-201ENST00000581811 299 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.4□□□□□ -1.54
SCN4AP35499 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.4□□□□□ -1.54
SCN4AP35499 MIR6875-201ENST00000617506 72 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
SCN4AP35499 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
SCN4AP35499 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.4□□□□□ -1.55
SCN4AP35499 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SCN4AP35499 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.4□□□□□ -1.55
SCN4AP35499 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SCN4AP35499 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SCN4AP35499 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.55
SCN4AP35499 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SCN4AP35499 MAPK10-372ENST00000641954 3413 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 MIR449B-201ENST00000384995 97 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.39□□□□□ -1.55
SCN4AP35499 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
SCN4AP35499 RPS27AP13-201ENST00000498403 237 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 AL160281.1-201ENST00000605307 311 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 OR51C1P-201ENST00000608504 942 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 AC006484.1-201ENST00000435086 1884 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 LINC00622-201ENST00000562811 1570 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 CPHL1P-201ENST00000461341 3407 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SCN4AP35499 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AL583835.1-201ENST00000399570 407 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AC093578.1-201ENST00000415219 368 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.39□□□□□ -1.55
SCN4AP35499 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.39□□□□□ -1.55
SCN4AP35499 NPM1P26-201ENST00000426339 738 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.39□□□□□ -1.55
SCN4AP35499 RPS29P7-201ENST00000439662 171 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 VN1R105P-201ENST00000486595 910 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AC020890.1-201ENST00000491837 504 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.39□□□□□ -1.55
SCN4AP35499 AC020634.1-201ENST00000608701 549 ntBASIC5.39□□□□□ -1.55
SCN4AP35499 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SCN4AP35499 AC005261.6-201ENST00000623072 1387 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.38□□□□□ -1.55
SCN4AP35499 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.38□□□□□ -1.55
SCN4AP35499 RN7SKP74-201ENST00000362849 309 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 RN7SKP159-201ENST00000410657 292 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.38□□□□□ -1.55
SCN4AP35499 AC098799.3-201ENST00000506095 438 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 OR7E10P-201ENST00000526420 991 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.38□□□□□ -1.55
SCN4AP35499 AC006349.1-201ENST00000555526 235 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 AGGF1P9-201ENST00000561884 913 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.38□□□□□ -1.55
SCN4AP35499 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.38□□□□□ -1.55
SCN4AP35499 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.38□□□□□ -1.55
SCN4AP35499 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SCN4AP35499 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SCN4AP35499 MIR331-201ENST00000362302 94 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.37□□□□□ -1.55
SCN4AP35499 REREP1Y-201ENST00000422655 198 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 GOT2P5-201ENST00000433995 546 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 REREP2Y-201ENST00000439103 200 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 AL162151.2-201ENST00000448875 158 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.37□□□□□ -1.55
SCN4AP35499 RPS20P4-201ENST00000461659 355 ntBASIC5.37□□□□□ -1.55
SCN4AP35499 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.37□□□□□ -1.55
SCN4AP35499 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.37□□□□□ -1.55
SCN4AP35499 AC084757.4-201ENST00000616350 526 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms