Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 MAPK10-303ENST00000641324 3959 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC079168.2-201ENST00000453977 416 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC005008.1-201ENST00000456151 612 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 RPL5P30-201ENST00000465511 891 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 MTND2P17-201ENST00000550281 688 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 GLRXP2-201ENST00000555594 321 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC009117.1-201ENST00000563948 554 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 CD24P2-201ENST00000565486 219 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC122134.1-201ENST00000565664 1104 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC209154.1-201ENST00000582156 337 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC005520.3-201ENST00000602874 370 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC104785.1-201ENST00000603220 588 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC015849.6-201ENST00000605454 474 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC073137.1-201ENST00000605636 634 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 MIR6820-201ENST00000611508 62 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AC007382.1-201ENST00000624376 2618 ntBASIC3.56□□□□□ -1.84
HLA-DMBP28068 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC091046.3-201ENST00000631455 1574 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC087190.4-201ENST00000574616 8334 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 MGP-201ENST00000228938 694 ntTSL 3 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 RN7SKP115-201ENST00000363177 317 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AL590762.2-201ENST00000395798 571 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 HMGB3P7-201ENST00000400214 611 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 CEACAMP8-201ENST00000413902 580 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 OR2X1P-201ENST00000421144 687 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 Z74021.1-201ENST00000423610 407 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 IPMKP1-201ENST00000425988 855 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC008072.1-201ENST00000434254 824 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 SLC25A18P1-201ENST00000449385 454 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 OR52J1P-201ENST00000450596 932 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 ATP5A1P7-201ENST00000453978 1279 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 FGF7P3-201ENST00000454645 303 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC105233.1-201ENST00000498840 781 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 GSTP1P1-201ENST00000548078 319 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AP001521.2-201ENST00000608772 546 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AL355852.1-201ENST00000454081 1771 ntBASIC3.55□□□□□ -1.84
HLA-DMBP28068 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HLA-DMBP28068 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HLA-DMBP28068 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 NCLP2-201ENST00000416078 1462 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AL442639.1-201ENST00000625030 1899 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC132825.1-201ENST00000463573 2247 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms