Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 Z95331.1-201ENST00000623075 23112 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 SNORA70F-201ENST00000384142 135 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 MT-TP-201ENST00000387461 68 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 RPL26P29-201ENST00000415623 438 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 OR51A6P-201ENST00000418680 1004 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 BTF3P9-201ENST00000418784 283 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 FABP7P2-201ENST00000429946 379 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 TRIM60P13-201ENST00000432350 1283 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC007563.3-201ENST00000433233 371 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 NMNAT1P2-201ENST00000435192 860 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 MTCYBP29-201ENST00000436327 1006 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 TDGF1P1-201ENST00000445734 527 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 RPL23AP72-201ENST00000492447 435 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 MTND4LP2-201ENST00000502312 285 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC018552.1-201ENST00000562099 811 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC084373.1-201ENST00000603311 235 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC119501.1-201ENST00000603646 475 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 uc_338.18-201ENST00000615451 175 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AL356274.1-201ENST00000617064 410 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC004232.3-201ENST00000622977 525 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 U3.53-201ENST00000628922 216 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AL136164.3-201ENST00000624429 3978 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 AC083843.2-201ENST00000568248 6253 ntBASIC4.72□□□□□ -1.65
LHX3Q9UBR4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LHX3Q9UBR4 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.65
LHX3Q9UBR4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
LHX3Q9UBR4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.71□□□□□ -1.65
LHX3Q9UBR4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
LHX3Q9UBR4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
LHX3Q9UBR4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 MIR192-201ENST00000384915 110 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 RNA5SP397-201ENST00000391323 118 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 GSTA12P-201ENST00000402398 508 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AL592291.1-201ENST00000403830 352 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AL080315.1-201ENST00000406055 466 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 RPS16P5-201ENST00000406501 404 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC092570.3-201ENST00000420113 693 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC069213.2-201ENST00000420238 366 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC006065.1-201ENST00000422539 802 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AL138878.2-201ENST00000440581 1241 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 MRPL48P1-201ENST00000445390 636 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC104651.2-201ENST00000447549 528 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 CALM1P2-201ENST00000452941 448 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC037198.2-201ENST00000478845 733 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 FABP5P6-201ENST00000510588 409 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC007016.1-201ENST00000512110 244 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 LSM3P2-201ENST00000551246 273 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 MIMT1-201ENST00000597105 1050 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 MIR6820-201ENST00000611508 62 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 LINC00216-201ENST00000623548 1126 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC138965.3-201ENST00000623875 498 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC021106.3-201ENST00000623925 531 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC000374.1-201ENST00000434698 1745 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 THAP12P5-201ENST00000405864 2275 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC135352.1-201ENST00000506173 1418 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms