Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL591379.1-207ENST00000635982 261 ntBASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.96□□□□□ -1.46
TRIM39Q9HCM9 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC012254.3-201ENST00000591183 2117 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 OR10R3P-201ENST00000361688 942 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AL360271.1-201ENST00000395679 510 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AL133264.1-201ENST00000407157 562 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 RNU6-272P-201ENST00000411028 104 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 RPL35AP3-201ENST00000414680 288 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC016027.5-201ENST00000427227 210 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SKP1P3-201ENST00000429280 487 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AL589823.1-201ENST00000429577 183 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 TUBB4BP6-201ENST00000437576 479 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 MTND2P19-201ENST00000449129 1012 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 RPS27P23-201ENST00000487608 251 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LAMTOR3P2-201ENST00000504479 232 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SMARCE1P4-201ENST00000523647 241 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 TRIM77BP-201ENST00000524985 1119 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC007494.1-201ENST00000562293 760 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AP001981.2-201ENST00000603241 418 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AL136131.3-201ENST00000607600 188 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 MIR6809-201ENST00000612189 116 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC073348.1-201ENST00000623002 331 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC011447.7-201ENST00000624228 1590 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC022031.1-201ENST00000585985 2593 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 AC005725.1-201ENST00000577346 2607 ntBASIC5.95□□□□□ -1.46
TRIM39Q9HCM9 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 WDR95P-201ENST00000425638 1542 ntBASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 AC073429.2-201ENST00000569694 1444 ntBASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 SNORA4.1-201ENST00000364263 144 ntBASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 MT-TH-201ENST00000387441 69 ntBASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
TRIM39Q9HCM9 RPL23AP47-201ENST00000408017 460 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms