Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RBM22P1-201ENST00000578589 1214 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 ABI1P1-201ENST00000603375 1120 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC073869.10-201ENST00000642016 354 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 ZNF90P1-201ENST00000480493 1951 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC005294.1-201ENST00000355509 281 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 DYNLL1P7-201ENST00000429273 258 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 RSL24D1P8-201ENST00000434442 492 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 RPS26P41-201ENST00000450370 284 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 NDUFS5P3-201ENST00000450668 321 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 RPL37P3-201ENST00000456825 293 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 RPS20P4-201ENST00000461659 355 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 RN7SL30P-201ENST00000488416 306 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 RPS4XP14-201ENST00000493072 781 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC024558.1-201ENST00000505008 528 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 ELOCP28-201ENST00000590044 317 ntBASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.02□□□□□ -1.61
VMP1Q96GC9 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VMP1Q96GC9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 PNPT1P2-201ENST00000456768 2050 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 AL034549.2-201ENST00000618285 3373 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 TLK1P1-201ENST00000456760 2440 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 SNORA67-201ENST00000384423 137 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 HMGB1P10-201ENST00000395823 563 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 RPL12P9-201ENST00000412942 488 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 RPL35AP24-201ENST00000413846 330 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 RPL19P16-201ENST00000433839 588 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 ELOCP11-201ENST00000436690 332 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 ELOCP16-201ENST00000444494 332 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AL163193.1-201ENST00000444895 788 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 CYCSP24-201ENST00000445119 316 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 TPTE2P6-202ENST00000445572 1007 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 RPS21P4-201ENST00000487122 248 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 CDC42P3-201ENST00000518493 633 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 AP004607.2-201ENST00000533949 322 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 RN7SL356P-201ENST00000582228 248 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 AC109583.2-201ENST00000617367 129 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AC090617.9-201ENST00000623751 147 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 AC100757.1-201ENST00000616872 1835 ntBASIC5.01□□□□□ -1.61
VMP1Q96GC9 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.01□□□□□ -1.61
VMP1Q96GC9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VMP1Q96GC9 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms