Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RN7SL98P-201ENST00000462271 300 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC027216.1-201ENST00000577726 685 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC105254.2-201ENST00000603636 436 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC008758.3-201ENST00000507003 1829 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 YME1L1P1-201ENST00000429435 297 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RN7SL197P-201ENST00000466981 299 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC027369.5-201ENST00000533838 755 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AP000843.1-201ENST00000624880 701 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 IGKV7-3-201ENST00000357453 298 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RPL7AP49-201ENST00000429522 581 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AL591438.1-201ENST00000433508 581 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AL358232.1-201ENST00000448030 501 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 FTH1P21-201ENST00000512179 511 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ST7-212ENST00000422922 1887 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 FTO-203ENST00000460382 1517 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ATP5F1P2-201ENST00000398143 760 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RCC2P2-201ENST00000422174 918 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 SETP9-201ENST00000423837 832 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 OR1H1P-201ENST00000448731 937 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RN7SKP260-201ENST00000516907 149 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC025884.1-201ENST00000556034 378 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 MIR3138-201ENST00000585238 82 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC008833.1-201ENST00000611633 691 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RNA5SP439-201ENST00000617595 124 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RNA5-8SP7-201ENST00000363443 155 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 PEX12P1-201ENST00000400284 1048 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 TRIM60P9Y-201ENST00000438459 816 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ATP6V0E1P2-201ENST00000441771 245 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 TRIM60P11Y-201ENST00000445313 801 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC090286.3-201ENST00000573133 187 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC002069.2-201ENST00000603580 883 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC006338.2-201ENST00000616864 791 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 CASC19-204ENST00000641001 2055 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC108751.5-201ENST00000492880 1336 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 ZNF962P-201ENST00000443465 3140 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 MFSD8-220ENST00000641243 1422 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 TEX41-203ENST00000420472 765 ntTSL 3 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 NDUFA12P1-201ENST00000455914 406 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 VN1R105P-201ENST00000486595 910 ntBASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC1.42□□□□□ -2.18
SYNE1Q8NF91 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 146.9 ms