Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC099654.2-201ENST00000433031 1980 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 RNU6-304P-201ENST00000364855 107 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MIR320B1-201ENST00000390209 79 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 RPS3AP23-201ENST00000401762 784 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AMZ2P2-201ENST00000406819 1057 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 RPL17P36-201ENST00000420302 549 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 RPL18P10-201ENST00000425606 538 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 COX6CP13-201ENST00000428703 226 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL353597.2-202ENST00000434901 373 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 ELOCP10-201ENST00000440624 327 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL157827.1-201ENST00000447622 132 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 OR1H1P-201ENST00000448731 937 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 EIF4A1P11-201ENST00000451239 222 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AP002345.1-201ENST00000456493 928 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC009643.1-201ENST00000532030 391 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MIR4660-201ENST00000583549 74 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 ELOCP34-201ENST00000604436 327 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AL391358.1-201ENST00000605342 190 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC073111.2-201ENST00000605657 1075 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AC091932.2-201ENST00000623014 291 ntBASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HDDC3Q8N4P3 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AL136116.2-201ENST00000404020 785 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 RNA5SP113-201ENST00000410486 84 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC069213.2-201ENST00000420238 366 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 NDUFA5P10-201ENST00000432147 357 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 NDUFA5P1-201ENST00000433858 341 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 MTCYBP12-201ENST00000440559 1134 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms