Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SKA3Q8IX90 RNA5SP392-201ENST00000516905 112 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 AF186190.1-201ENST00000517470 480 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 OR7E10P-201ENST00000526420 991 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 GCSHP4-201ENST00000538792 439 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC008033.2-201ENST00000542626 177 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC011487.3-201ENST00000593607 453 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC107308.1-201ENST00000615897 301 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC015722.2-201ENST00000622210 551 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 AC008758.3-201ENST00000507003 1829 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
SKA3Q8IX90 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
SKA3Q8IX90 KPNA2P2-201ENST00000419546 1489 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SKA3Q8IX90 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SKA3Q8IX90 IRF5P1-201ENST00000504852 2164 ntBASIC4.29□□□□□ -1.72
SKA3Q8IX90 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 SNORA51.8-201ENST00000384234 132 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 RNA5SP345-201ENST00000410646 108 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AL160275.2-201ENST00000412010 394 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 OR51A6P-201ENST00000418680 1004 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 OR2AM1P-201ENST00000422137 422 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 EIF4EP1-201ENST00000422311 642 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 PTMAP3-201ENST00000447474 330 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 MTND3P4-201ENST00000453537 303 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 GYG1P1-201ENST00000460864 698 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 RN7SL329P-201ENST00000467740 299 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 DEFB109F-201ENST00000491870 277 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 BTF3P13-201ENST00000513224 490 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC027308.1-201ENST00000517993 110 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 MORF4L1P3-201ENST00000525966 950 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 DUX4L52-201ENST00000549363 777 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 MIR4646-201ENST00000580775 63 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC020910.3-201ENST00000603701 874 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC010424.2-201ENST00000607594 443 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC239803.2-201ENST00000610161 430 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 AL022401.1-201ENST00000619498 108 ntBASIC4.28□□□□□ -1.72
SKA3Q8IX90 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SKA3Q8IX90 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.28□□□□□ -1.72
SKA3Q8IX90 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.28□□□□□ -1.73
SKA3Q8IX90 MTND4P26-201ENST00000415971 1359 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 RNU6-152P-201ENST00000384037 107 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 HMGB3P7-201ENST00000400214 611 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 MTCO1P45-201ENST00000431457 267 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC093414.1-201ENST00000434712 514 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 ARL5AP3-201ENST00000439327 386 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC114878.1-201ENST00000441166 358 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 TXNP2-201ENST00000443918 295 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 MORF4L1P4-201ENST00000450245 976 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC107015.1-201ENST00000466902 747 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC108751.2-201ENST00000469993 231 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 NDUFA5P12-201ENST00000503796 343 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 GAPDHP56-201ENST00000506031 988 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms