Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 NDUFA12P1-201ENST00000455914 406 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RPS29P33-201ENST00000456717 146 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 DEFB109F-201ENST00000491870 277 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AC134698.5-201ENST00000519444 336 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXF1Q12946 MIR4330-201ENST00000579077 105 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AC008782.1-201ENST00000603386 430 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AC233280.2-201ENST00000603917 1070 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AL451049.1-201ENST00000608672 497 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 MIR6820-201ENST00000611508 62 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 uc_338.18-201ENST00000615451 175 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AP000346.3-201ENST00000622821 210 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AC079298.2-201ENST00000623885 459 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 OR2L1P-202ENST00000641567 1023 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 Z98755.1-201ENST00000407015 1384 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXF1Q12946 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXF1Q12946 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXF1Q12946 AC120338.1-201ENST00000625074 1541 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 LINC00622-201ENST00000562811 1570 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 HSPD1P14-201ENST00000432666 1618 ntBASIC4.09□□□□□ -1.76
FOXF1Q12946 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXF1Q12946 RNU6-249P-201ENST00000363016 102 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXF1Q12946 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
FOXF1Q12946 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXF1Q12946 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXF1Q12946 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXF1Q12946 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXF1Q12946 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXF1Q12946 RPS6P2-201ENST00000454208 705 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 RPL21P6-201ENST00000479171 504 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 RN7SL205P-201ENST00000490174 284 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXF1Q12946 RNA5SP446-201ENST00000515955 82 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 RNA5SP360-201ENST00000516555 118 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 CDH12P4-201ENST00000517835 295 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 CDH12P3-201ENST00000517935 295 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 CDH12P1-201ENST00000518435 295 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXF1Q12946 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
FOXF1Q12946 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXF1Q12946 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXF1Q12946 HMGB2P1-201ENST00000591146 634 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 RPL12P25-202ENST00000598100 674 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC234771.5-201ENST00000600161 514 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC090181.2-201ENST00000602975 672 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC093765.1-201ENST00000603758 881 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC244517.3-201ENST00000616254 1235 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 RN7SL722P-201ENST00000617780 284 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 RN7SL565P-201ENST00000618246 284 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AC005086.4-201ENST00000623065 213 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 AP001002.1-201ENST00000625148 1513 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 AC000123.3-201ENST00000624029 4975 ntBASIC4.08□□□□□ -1.76
FOXF1Q12946 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXF1Q12946 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXF1Q12946 NXPH1-205ENST00000602349 1953 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXF1Q12946 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXF1Q12946 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXF1Q12946 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
FOXF1Q12946 RNU1-94P-201ENST00000362627 173 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 RNA5SP151-201ENST00000365632 117 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
FOXF1Q12946 MIR129-1-201ENST00000384972 72 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 PPIAP13-201ENST00000434706 478 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms