Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SCARNA21.2-201ENST00000516600 166 ntBASIC4.36□□□□□ -1.71
CDX1P47902 HMGB1P23-201ENST00000518743 568 ntBASIC4.36□□□□□ -1.71
CDX1P47902 IGKV2-18-201ENST00000522607 343 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC100784.1-201ENST00000522790 310 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 AC011611.5-201ENST00000552477 578 ntBASIC4.36□□□□□ -1.71
CDX1P47902 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 AL008729.2-201ENST00000606393 473 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC010245.2-201ENST00000606908 1167 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC006946.3-201ENST00000609791 756 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC079395.2-201ENST00000610982 737 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AL133445.2-201ENST00000611191 527 ntBASIC4.36□□□□□ -1.71
CDX1P47902 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 AL035661.1-201ENST00000620459 1144 ntBASIC4.36□□□□□ -1.71
CDX1P47902 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 AC079097.1-201ENST00000512187 1399 ntBASIC4.36□□□□□ -1.71
CDX1P47902 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 AC011155.1-201ENST00000316512 456 ntBASIC4.35□□□□□ -1.71
CDX1P47902 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 RN7SKP6-201ENST00000364795 319 ntBASIC4.35□□□□□ -1.71
CDX1P47902 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 AC013442.1-201ENST00000397347 228 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AL035405.1-201ENST00000400795 710 ntBASIC4.35□□□□□ -1.71
CDX1P47902 MTATP6P31-201ENST00000406985 692 ntBASIC4.35□□□□□ -1.71
CDX1P47902 Z93019.1-201ENST00000416450 973 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 CDY14P-201ENST00000431260 1014 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC006335.2-201ENST00000437993 330 ntBASIC4.35□□□□□ -1.71
CDX1P47902 CDY12P-201ENST00000440679 1015 ntBASIC4.35□□□□□ -1.71
CDX1P47902 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 CDY13P-201ENST00000445813 1015 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 CDY23P-201ENST00000451661 1014 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AP000547.1-201ENST00000454360 617 ntBASIC4.35□□□□□ -1.71
CDX1P47902 RN7SL583P-201ENST00000475692 287 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 SIAH1P1-201ENST00000479411 923 ntBASIC4.35□□□□□ -1.71
CDX1P47902 EIF1P7-201ENST00000487533 337 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.35□□□□□ -1.71
CDX1P47902 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 AL035404.1-201ENST00000497982 568 ntBASIC4.35□□□□□ -1.71
CDX1P47902 MTND3P3-201ENST00000505004 126 ntBASIC4.35□□□□□ -1.71
CDX1P47902 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 DUTP7-201ENST00000507982 486 ntBASIC4.35□□□□□ -1.71
CDX1P47902 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 AC112198.4-201ENST00000515450 351 ntBASIC4.35□□□□□ -1.71
CDX1P47902 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 COX6B1P6-201ENST00000522347 255 ntBASIC4.35□□□□□ -1.71
CDX1P47902 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.35□□□□□ -1.71
CDX1P47902 PMS2P3-207ENST00000529061 717 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC027369.5-201ENST00000533838 755 ntBASIC4.35□□□□□ -1.71
CDX1P47902 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.35□□□□□ -1.71
CDX1P47902 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 HSPE1P2-201ENST00000554777 306 ntBASIC4.35□□□□□ -1.71
CDX1P47902 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.35□□□□□ -1.71
CDX1P47902 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.35□□□□□ -1.71
CDX1P47902 H3F3BP2-201ENST00000583907 357 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
CDX1P47902 BNIP3P31-201ENST00000604515 566 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC093875.1-201ENST00000623688 504 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC132068.1-201ENST00000623805 459 ntBASIC4.35□□□□□ -1.71
CDX1P47902 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.35□□□□□ -1.71
CDX1P47902 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.35□□□□□ -1.71
CDX1P47902 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CDX1P47902 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms