Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 RN7SKP149-201ENST00000363008 344 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 RNA5SP28-201ENST00000363841 119 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 RPL21P108-201ENST00000413857 481 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC009237.10-201ENST00000414112 510 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 MTND4LP21-201ENST00000415303 295 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 OR51A6P-201ENST00000418680 1004 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 VN1R37P-201ENST00000419096 748 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 LINC00993-201ENST00000420453 540 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AL049745.1-201ENST00000433953 286 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 PTMAP3-201ENST00000447474 330 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC091868.1-201ENST00000508746 304 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 RN7SKP34-201ENST00000516142 244 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC021006.3-201ENST00000530771 192 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 GCSHP4-201ENST00000538792 439 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC008033.2-201ENST00000542626 177 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 DHX9P1-201ENST00000436565 3076 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 RLIMP2-201ENST00000427891 1563 ntBASIC3.58□□□□□ -1.84
HLA-DMBP28068 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 SNORA81-201ENST00000408493 178 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 RPL12P43-201ENST00000420608 499 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AL360081.1-201ENST00000428299 555 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC092324.1-201ENST00000468671 324 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 BTF3P13-201ENST00000513224 490 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 NPM1P6-201ENST00000521088 871 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC015912.2-201ENST00000571053 181 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 RN7SL802P-201ENST00000577858 299 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 MIR5699-201ENST00000578903 90 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC022726.1-201ENST00000587475 207 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC010300.1-201ENST00000600671 5134 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AL031320.1-201ENST00000604177 357 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 FAM27B-201ENST00000610601 213 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 uc_338.18-201ENST00000615451 175 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC009704.2-201ENST00000618739 483 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC087385.3-201ENST00000620477 187 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC005086.4-201ENST00000623065 213 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AL121950.1-201ENST00000624993 2077 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 SAMMSON-226ENST00000642089 1582 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HLA-DMBP28068 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.57□□□□□ -1.84
HLA-DMBP28068 SMG1P6-201ENST00000532337 2930 ntBASIC3.57□□□□□ -1.84
HLA-DMBP28068 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC3.56□□□□□ -1.84
HLA-DMBP28068 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms