Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL590229.1-201ENST00000603497 542 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.29□□□□□ -1.4
COL6A1P12109 AL354976.1-201ENST00000613843 387 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC007786.3-201ENST00000615154 596 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 uc_338.18-201ENST00000615451 175 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.29□□□□□ -1.4
COL6A1P12109 AC091953.3-201ENST00000623220 236 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC067852.7-201ENST00000623270 535 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC007490.1-201ENST00000624321 703 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AL392088.2-201ENST00000637607 285 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 SAMMSON-213ENST00000641336 1521 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.29□□□□□ -1.4
COL6A1P12109 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC016745.2-201ENST00000608834 3443 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC092724.1-201ENST00000624623 3397 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC092070.2-203ENST00000598377 3644 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC130304.1-201ENST00000622942 2385 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 SNORD56.4-201ENST00000363883 71 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 Y_RNA.194-201ENST00000363985 102 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL6A1P12109 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 RNU6-224P-201ENST00000384055 107 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 HMGB1P10-201ENST00000395823 563 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.28□□□□□ -1.4
COL6A1P12109 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC6.28□□□□□ -1.4
COL6A1P12109 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 OR6D1P-201ENST00000436165 939 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 RPS11P7-201ENST00000442125 465 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC009961.3-201ENST00000449832 765 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 MTCO2P18-201ENST00000457151 658 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AL133477.1-201ENST00000457472 514 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC006463.2-201ENST00000473326 348 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 RN7SL447P-201ENST00000494711 245 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 MTND5P13-201ENST00000513046 1079 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AL671862.1-201ENST00000515851 349 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL6A1P12109 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AL049779.3-201ENST00000557141 606 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 RBM22P1-201ENST00000578589 1214 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 MIR4330-201ENST00000579077 105 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.28□□□□□ -1.4
COL6A1P12109 AC064872.1-201ENST00000604823 1072 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 WT1-AS_8.1-201ENST00000615200 275 ntBASIC6.28□□□□□ -1.4
COL6A1P12109 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.28□□□□□ -1.4
COL6A1P12109 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.28□□□□□ -1.4
COL6A1P12109 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.28□□□□□ -1.4
COL6A1P12109 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL6A1P12109 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.27□□□□□ -1.4
COL6A1P12109 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL6A1P12109 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL6A1P12109 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 SNORD113-6-201ENST00000363345 75 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 CYB5AP4-201ENST00000396692 399 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AL035419.1-201ENST00000397037 564 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 RPS3AP26-201ENST00000398259 784 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 U3.36-201ENST00000408418 213 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 RPS17P17-201ENST00000419392 409 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 RPF2P1-201ENST00000424137 906 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms