Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 RNU1-108P-201ENST00000362556 161 ntBASIC4.63□□□□□ -1.67
LSM1O15116 SNORA70-201ENST00000384436 135 ntBASIC4.63□□□□□ -1.67
LSM1O15116 MIR223-201ENST00000385204 110 ntBASIC4.63□□□□□ -1.67
LSM1O15116 ARL4AP5-201ENST00000404372 599 ntBASIC4.63□□□□□ -1.67
LSM1O15116 RN7SKP206-201ENST00000410823 293 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 GTF2IP5-201ENST00000414608 731 ntBASIC4.63□□□□□ -1.67
LSM1O15116 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 AC005033.1-201ENST00000428904 813 ntBASIC4.63□□□□□ -1.67
LSM1O15116 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.63□□□□□ -1.67
LSM1O15116 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 FHP1-201ENST00000442741 703 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 RPS18P6-201ENST00000476880 458 ntBASIC4.63□□□□□ -1.67
LSM1O15116 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 LARP7P4-201ENST00000481075 878 ntBASIC4.63□□□□□ -1.67
LSM1O15116 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 HIGD1AP14-201ENST00000507617 282 ntBASIC4.63□□□□□ -1.67
LSM1O15116 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 VTA1P2-201ENST00000520205 911 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
LSM1O15116 FKBP1BP1-201ENST00000553366 325 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC004825.1-201ENST00000555068 586 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AP000919.1-201ENST00000582850 985 ntBASIC4.63□□□□□ -1.67
LSM1O15116 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 SNX6P1-201ENST00000601728 1224 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC093799.2-201ENST00000610062 578 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC078899.5-201ENST00000612475 178 ntBASIC4.63□□□□□ -1.67
LSM1O15116 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.63□□□□□ -1.67
LSM1O15116 AC004808.2-201ENST00000627965 773 ntBASIC4.63□□□□□ -1.67
LSM1O15116 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.63□□□□□ -1.67
LSM1O15116 AC055839.1-201ENST00000634467 498 ntBASIC4.63□□□□□ -1.67
LSM1O15116 LINC01739-205ENST00000641890 573 ntBASIC4.63□□□□□ -1.67
LSM1O15116 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
LSM1O15116 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LSM1O15116 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
LSM1O15116 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.63□□□□□ -1.67
LSM1O15116 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.63□□□□□ -1.67
LSM1O15116 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.62□□□□□ -1.67
LSM1O15116 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 Z73965.1-201ENST00000623412 2297 ntBASIC4.62□□□□□ -1.67
LSM1O15116 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 PNPT1P2-201ENST00000456768 2050 ntBASIC4.62□□□□□ -1.67
LSM1O15116 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LSM1O15116 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LSM1O15116 AL645733.1-201ENST00000402250 217 ntBASIC4.62□□□□□ -1.67
LSM1O15116 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.62□□□□□ -1.67
LSM1O15116 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.62□□□□□ -1.67
LSM1O15116 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.62□□□□□ -1.67
LSM1O15116 RPS17P8-201ENST00000434525 335 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AC093414.1-201ENST00000434712 514 ntBASIC4.62□□□□□ -1.67
LSM1O15116 UBE2V2P1-201ENST00000434717 398 ntBASIC4.62□□□□□ -1.67
LSM1O15116 BTG3P1-201ENST00000435859 716 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 CASP3P1-201ENST00000446037 609 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AURKAPS1-201ENST00000451805 1212 ntBASIC4.62□□□□□ -1.67
LSM1O15116 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.62□□□□□ -1.67
LSM1O15116 RPL23AP56-201ENST00000460778 453 ntBASIC4.62□□□□□ -1.67
LSM1O15116 RN7SL30P-201ENST00000488416 306 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AC025445.1-201ENST00000502728 300 ntBASIC4.62□□□□□ -1.67
LSM1O15116 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.62□□□□□ -1.67
LSM1O15116 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.62□□□□□ -1.67
LSM1O15116 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.62□□□□□ -1.67
LSM1O15116 AC022832.1-201ENST00000530718 645 ntBASIC4.62□□□□□ -1.67
LSM1O15116 OR8X1P-201ENST00000534542 869 ntBASIC4.62□□□□□ -1.67
LSM1O15116 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 AC079075.1-201ENST00000559543 878 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AC093249.4-201ENST00000564755 259 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.62□□□□□ -1.67
LSM1O15116 AL121932.1-201ENST00000605542 214 ntBASIC4.62□□□□□ -1.67
LSM1O15116 AC034236.3-201ENST00000605999 461 ntBASIC4.62□□□□□ -1.67
LSM1O15116 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 OR11H5P-202ENST00000641612 1325 ntBASIC4.62□□□□□ -1.67
LSM1O15116 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.62□□□□□ -1.67
LSM1O15116 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LSM1O15116 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.62□□□□□ -1.67
LSM1O15116 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms