Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AL591719.1-201ENST00000444669 744 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 TRY2P-201ENST00000448860 689 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 ZNF886P-201ENST00000450781 723 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 RN7SL727P-201ENST00000482164 296 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 RPS12P31-201ENST00000491419 398 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC005351.1-201ENST00000511152 786 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 RNU6-1004P-201ENST00000516584 111 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AP000859.1-201ENST00000525536 307 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 OR4U1P-201ENST00000554958 912 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC015720.2-201ENST00000567709 334 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 DPRXP4-201ENST00000578053 568 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MIR4311-201ENST00000580794 100 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MIR8080-201ENST00000622224 89 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC010435.1-201ENST00000623353 1177 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AC120349.3-201ENST00000624377 529 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 MTCO1P15-201ENST00000529569 1526 ntBASIC5.32□□□□□ -1.56
VPS4AQ9UN37 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS4AQ9UN37 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC079097.1-201ENST00000512187 1399 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 YES1P1-201ENST00000418510 1628 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 ZNF733P-202ENST00000444809 1573 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC233289.1-201ENST00000403700 508 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 RN7SKP213-201ENST00000410746 298 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AL449283.1-202ENST00000418249 604 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 OR6C64P-201ENST00000419708 825 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 RIMKLBP2-201ENST00000424737 654 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC009784.1-201ENST00000426484 460 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 GTF2IP3-201ENST00000433887 494 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 SETP8-201ENST00000435341 628 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 CEACAMP7-201ENST00000444105 496 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 HSFY3P-201ENST00000444242 1191 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 EEF1B2P5-201ENST00000444820 548 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AL450996.1-201ENST00000445574 1202 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 IGBP1P3-201ENST00000447449 1000 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC073850.1-201ENST00000449243 255 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 OR51B8P-201ENST00000449892 769 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC092155.2-201ENST00000454675 477 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC005532.2-201ENST00000467154 373 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC009120.1-201ENST00000493458 473 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 MTND4LP2-201ENST00000502312 285 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 UBTFL10-201ENST00000528532 562 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 OR5AM1P-201ENST00000532136 1032 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 OR7E128P-201ENST00000532736 1024 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC011611.5-201ENST00000552477 578 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AL390334.1-201ENST00000556395 450 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 RBM22P12-201ENST00000567098 1255 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 H3F3BP2-201ENST00000583907 357 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC245036.5-201ENST00000596330 847 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 NIFKP6-201ENST00000598115 845 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC113368.1-201ENST00000603736 382 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AL035411.2-201ENST00000604022 421 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 MIR6820-201ENST00000611508 62 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms