Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 OR11J2P-201ENST00000555298 907 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 MIR4489-201ENST00000578869 62 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC022884.3-201ENST00000579571 248 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 SS18L2P2-201ENST00000583960 235 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC017076.1-201ENST00000607613 578 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AL627230.1-201ENST00000613077 211 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AL591926.8-201ENST00000616876 211 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC016957.2-201ENST00000616998 848 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 uc_338.9-201ENST00000617424 182 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC087190.4-201ENST00000574616 8334 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC083843.3-201ENST00000623679 2186 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AL049555.1-201ENST00000562834 1933 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC007382.1-201ENST00000624376 2618 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 PABPC1P6-201ENST00000445594 1829 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 RNU6-819P-201ENST00000364116 107 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AL359643.1-201ENST00000404109 423 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AL035696.2-201ENST00000407941 709 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 SEC63P1-201ENST00000425785 1258 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 NMNAT1P2-201ENST00000435192 860 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AL157827.1-201ENST00000447622 132 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 OR2AF1P-201ENST00000454899 889 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 RN7SL222P-201ENST00000476452 299 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC084757.1-201ENST00000559987 490 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 NPM1P47-201ENST00000560843 856 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC110743.1-201ENST00000584870 478 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC009318.3-201ENST00000616916 503 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC022106.2-201ENST00000620114 757 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC012414.7-202ENST00000622705 1090 ntBASIC4.89□□□□□ -1.63
VPS39Q96JC1 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS39Q96JC1 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS39Q96JC1 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC027290.2-201ENST00000623210 18662 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AL607077.1-201ENST00000401718 499 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AL357515.1-201ENST00000402967 542 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AP000580.1-201ENST00000404439 358 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 U3.35-201ENST00000408405 208 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 U3.36-201ENST00000408418 213 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 RN7SKP229-201ENST00000410465 302 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 RN7SKP125-201ENST00000410481 302 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 RPL26P37-201ENST00000411983 438 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 EIF4A1P1-201ENST00000420241 934 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 RHOT1P3-201ENST00000436571 331 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 MTCYBP12-201ENST00000440559 1134 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC000111.2-201ENST00000448200 210 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC079841.1-201ENST00000481228 950 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 RPS27AP16-201ENST00000492222 470 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC072052.1-201ENST00000496556 306 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms