Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC008549.2-201ENST00000333482 706 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AL672167.2-201ENST00000377164 879 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RN7SKP202-201ENST00000410439 330 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 OR13Z1P-201ENST00000416141 834 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RPL35AP21-201ENST00000437667 333 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RN7SL691P-201ENST00000494487 301 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AL031119.1-201ENST00000404707 1879 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AC021146.4-201ENST00000309229 279 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 PEX12P1-201ENST00000400284 1048 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 RHEBP2-201ENST00000450289 600 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AC079804.1-201ENST00000461922 436 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 RN7SL303P-201ENST00000469773 251 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AC084783.1-201ENST00000565846 910 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 OR8G7P-201ENST00000616658 848 ntBASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC88AQ3V6T2 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
CCDC88AQ3V6T2 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.52
CCDC88AQ3V6T2 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.59□□□□□ -1.52
CCDC88AQ3V6T2 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 ATP5F1P3-201ENST00000397213 657 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 NDUFA5P1-201ENST00000433858 341 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AL157385.1-201ENST00000446973 268 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC091564.1-201ENST00000464563 479 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 OR2L1P-202ENST00000641567 1023 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 TCP11X1-202ENST00000622971 1372 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 THAP12P5-201ENST00000405864 2275 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 YY1P1-201ENST00000427625 668 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 DEFB109A-201ENST00000482450 265 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC008958.1-201ENST00000511047 682 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC108064.1-201ENST00000513791 460 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AP001804.2-201ENST00000533932 910 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 HNRNPCP4-201ENST00000571636 900 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AL357559.1-201ENST00000622228 274 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AC140479.6-201ENST00000633535 357 ntBASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC88AQ3V6T2 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC108467.2-201ENST00000617640 1597 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AL391684.1-202ENST00000641293 1636 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 RPL6P5-201ENST00000445678 828 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC090142.1-201ENST00000465776 462 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 RN7SL810P-201ENST00000493031 276 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 SNORA67.7-201ENST00000516664 135 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 OR8R1P-201ENST00000543943 764 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC009852.2-201ENST00000567898 485 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 AC008739.3-201ENST00000603262 127 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 DDX18P5-201ENST00000534547 1306 ntBASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC88AQ3V6T2 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms